SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14758

Length: 441 nt

UniGene Fasta

>sp_v3.0_unigene14758
TCAATTTCAAGTCTGGATAATTTAATAGTGTTGATAATGAATGGCTGTTCTGGTCTGACAAAGCTGGGATCATTGAATAATCGTCTGCAAGAACTCTCTTTGCAAGGCTGTGAAATTCTAAAAGAGCTTCCTAGCGAGCTTGAGAATCTTACATCATTGCAAAAACTCGATTTGTCCTGGTGTTTAAGTCTAAAAAAGCTTCCTAGAAGCCTTGGAAACCTCACATCATTGCAAGAACTCAATTTGTACAGCTGCTCAAGTCTAAGAGGTCTTCCTCTCAGTTTTGAGGAGCTTTCATCATTGAGATCATTGGACTTATCCCACTGTTCCAGAATAAAAGGTCTCCCTTGTGGCTTAGAAAAGTTAAAATCGCTTGTTATGCTTAATCTATATTGTTCTGGGCTAAGTAGCATTCCTGGAAGCATTGGGCAACTGAAGTTG

Ace file of the UniGene sp_v3.0_unigene14758

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana]	-	-	1.0e-16	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Disease resistance protein RPP1-WsB	-	-	1.79e-08	-

Source	Gene names
Sma3	At1g69550; At2g14080; F10D13_24; GSVIVT00031612001; OsI_30909; OsJ_28895; PHYPADRAFT_12156; PHYPADRAFT_132267; PHYPADRAFT_132491; PHYPADRAFT_134549; PHYPADRAFT_136879; PHYPADRAFT_139587; PHYPADRAFT_139639; PHYPADRAFT_141262; PHYPADRAFT_141292; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Protein of unknown function DUF220	IPR003863	-	-
Sma3	Toxin, beta-grasp, Staphylococcal/Streptococcal	IPR006123	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G14080.1	Disease resistance protein (TIR-NBS-LRR class) family chr2:5925225-5929600 FORWARD LENGTH=1215	2.0e-20	45%
RefSeq	Arabidopsis thaliana	NP_179024.1	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	3.0e-20	45%
RefSeq	Populus trichocarpa	XP_002334784.1	predicted protein [Populus trichocarpa]	3.0e-21	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPX1

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 147 - 1011

Fln protein: SISSLDNLIVLIMNGCSGLTKLGSLNNRLQELSLQGCEILKELPSELENLTSLQKLDLSWCLSLKKLPRSLGNLTSLQELNLYSCSSLRGLPLSFEELSSLRSLDLSHCSRIKGLPCGLEKLKSLVMLNLYCSGLSSIPGSIGQLKL

Protein Length: 148

Fln nts: TCAATTTCAAGTCTGGATAATTTAATAGTGTTGATAATGAATGGCTGTTCTGGTCTGACAAAGCTGGGATCATTGAATAATCGTCTGCAAGAACTCTCTTTGCAAGGCTGTGAAATTCTAAAAGAGCTTCCTAGCGAGCTTGAGAATCTTACATCATTGCAAAAACTCGATTTGTCCTGGTGTTTAAGTCTAAAAAAGCTTCCTAGAAGCCTTGGAAACCTCACATCATTGCAAGAACTCAATTTGTACAGCTGCTCAAGTCTAAGAGGTCTTCCTCTCAGTTTTGAGGAGCTTTCATCATTGAGATCATTGGACTTATCCCACTGTTCCAGAATAAAAGGTCTCCCTTGTGGCTTAGAAAAGTTAAAATCGCTTGTTATGCTTAATCTATATTGTTCTGGGCTAAGTAGCATTCCTGGAAGCATTGGGCAACTGAAGTTG

Fln Alignment:

Contig14758___SISSLDNLIVLIMNGCSGLTK----LGSLNNRLQELSLQGC------------------------EILKELPSELENLTSLQKLDLSWCLSLKKLPRSLGNL-TSLQELNLYSCSSLRGXXXXXXXXXXXXXXXXXXXXRIKGLPCGLEKLKSLVMLNL-YCSGLSSI
C0PPX1_______________SISKLQLLRVLRMDYCSSLMKVPEGLGSLNS-LQELNFQGCTNLRKLPNSLGKLFSLRILDLSSCEKLKELPHGIENLTSLVNLSFHKCASLRSIPESIGRLKSSAFSMDMSCCSSLRELPNLFVELGNLRELNLSDCTSLEKLPKGFTQLKYLVKLNLSKCGALKEL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain