SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14754

Length: 1762 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene14754 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NLJ2_PICSI	-	-	92%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31300.2	PBA1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein chr4:15188927-15190935 FORWARD LENGTH=234	85%
RefSeq	Arabidopsis thaliana	NP_001190879.1	proteasome subunit beta type-6 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002309021.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMI9

Fln msg:

Fln protein: MDIDWINAPHSLGTTIIGVTYNGGTVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAADSQVVSDYVRYFLHQHIIQLGQPATVKVAANLIRQLSYNNKNMLQTGLIVGGWDKYEGGSIYSVPLGGTILQLPFAIGGSGSSYLYGFLDQAWKEGMSKEEAEALVVKCVSLAIARDGASGGVVRTVVINSEGVTRNFYPGDKLPLWHEELPLRNSLLEEASSEVEPMRA*

Protein Length: 235

Fln nts: ACACAATTGTATACCTCTGAAATATATTTAATGGCCACCTTTAAAACCCGAATTTGAATTTGTTAGTTTAAAACCTGATTCACTCTTTATTCAGGCATTGAATTTTTTAGTTTCGTTGAGCACAACCAGGTTTCGGGAGGCCAAGACAAGGGTTTATAGAATACCAAGGCA_-_ATGGATATCGACTGGATCAATGCCCCTCATTCCCTGGGGACAACAATTATCGGGGTGACCTACAATGGAGGAACGGTTCTGGGAGCTGATTCGCGGACAAGCACGGGAATGTATGTGGCAAATCGAGCTTCGGATAAGATTACTCAACTCACTGATAATGTTTATCTCTGCCGCTCAGGCTCAGCTGCAGATTCCCAAGTGGTGTCTGATTACGTGCGCTATTTTCTTCATCAACACATAATACAACTTGGGCAACCTGCCACTGTGAAAGTTGCTGCTAACTTGATACGGCAATTATCATATAACAACAAGAACATGCTCCAGACTGGCCTCATTGTTGGTGGGTGGGATAAATATGAAGGGGGAAGCATCTATTCAGTGCCTCTTGGTGGTACAATTTTGCAGCTACCCTTTGCAATTGGAGGATCTGGTTCAAGCTACCTATACGGTTTTCTTGATCAGGCATGGAAAGAAGGAATGAGTAAGGAAGAGGCTGAGGCTCTTGTTGTCAAGTGTGTTTCTCTGGCCATTGCCAGAGACGGAGCAAGTGGAGGGGTTGTGCGCACTGTTGTTATAAACTCTGAAGGGGTGACAAGGAACTTTTATCCAGGAGACAAACTTCCTTTGTGGCATGAAGAATTGCCTCTGCGGAATTCGCTACTGGAAGAAGCATCAAGCGAGGTCGAACCTATGCGTGCTTAG___AACACTGGCATGCTCTTTATGTATGACAACGTGTGTTTGGTCACAACTCTGATTTCTCAGAATGATGTAAAACCCTTTGAATTGAACGTTATAAAATAAATGCATTTCATAATTAAAACGCTTATCATATGGGAAGTTTTTCCTGTTAATGAAATGTGGTTTTTATCAAAATATGCTGCTCAGATGCTAATGGGTGCTCATTTGTTTTGTGTGAGTAAATCTCATAACGGCGGTTCTGATCTCTACACAATTTCCTGGTGGCGTTAAATTGGAATTTATTGTTTGGTTTGAAGCAGGAAATGTTAGCTACAAACAGGTGGGTTTGTTCAGGGAATGTTGCTTAGAGATCGTAGTGGATCCTAATTTCATGAATCCTAGTACATGAAACTTTGAAATTCACCGCACATTGACCTATAGTTGAATTGCAAGTAGAATGACTGCTATGAGAACACCGAGTTTCAGATCTGGTGGACACTACAATATGATGCCAAGTAACAAATAAATTTAAATTTTGGAGCAACACATTCACATTTTGTGACCCAAGTAACAAATAATTTAACTTTGGAGCACCACACACTTTCACTTGTAGTTGCCCAAGTGTCTGGGTTTTAGGTGATCTCATCACGGGTATCTTTTGTGGCAAAGCATGTTCTGCAACCTAATTGTTTTGTTACCTTGTCACCTAAATATTTGCCCCAAGTGTCTGGGGTTTAGGTGATCTCATCACGGGTATCTTCTGTGGCAAAGCATGTTCTGCAACCTAATTATTTTGTTACCTTGTCACTGGCAATATTATCTTGTTACCTATTCAGTTGTACAAGTTGGAACACTTTGGTAGAAGATATATTTTTATGTTTCTTCCATGAAAATTGAGGGATCTTGTTACTCC

Fln Alignment:

Contig14754___MDIDWINAPHSLGTTIIGVTYNGGTVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAADSQVVSDYVRYFLHQHIIQLGQPATVKVAANLIRQLSYNNKNMLQTGLIVGGWDKYEGGSIYSVPLGGTILQLPFAIXXXXXSYLYGFLDQAWKEGMSKEEAEALVVKCVSLAIARDGASGGVVRTVVINSEGVTRNFYPGDKLPLWHEELPLRNSLLEEASSEVEPMRA
A9NMI9_______________MDMDWINAPHSMGTTIIGVTYNGGTVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAADSQVVSDYVRYFLHQHIIQLGQPATVKVTANLIRLLSYNNKNTLETGLIVGGWDKYEGGSIYSVPLGGTMLQLPFAIGGSGSSYLYGFLDQAWKDGMSKEEAEALVVKCVSLAIARDGASGGVVRTVVINSEGVTRNFYPGDKLPLWHEELPLRNSLLEEASSEAEPMHA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
585		5		95	0.997749
614	94		5		0.998744
645	6			93	0.999153
852	63	36			1.0
987		12		87	0.992554
1030	11		88		0.923564
1593		12	87		0.992554
1596	12			87	0.992554
1607	14			71	0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain