SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14749

Length: 1294 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14749

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein NLP2 n=3 Tax=Oryza sativa RepID=NLP2_ORYSJ	-	-	2.0e-18	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	RWP-RK domain containing protein, expressed	-	-	2.116e-09	-

Source	Gene names
Sma3	AT4g24020; At4g24020; GSVIVT00006691001; GSVIVT00034609001; LOC_Os11g16290; OsI_35726; OsJ_33567; POPTRDRAFT_1074191; POPTRDRAFT_293904; RCOM_0834700; RCOM_1312240; T19F6.16;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	response to nitrate	GO:0010167	Biological Process	-
Sma3	nitrate assimilation	GO:0042128	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phox/Bem1p	IPR000270	-	0.0	-
Sma3	Plant regulator RWP-RK	IPR003035	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G24020.1	NLP7 NIN like protein 7 chr4:12479904-12483822 FORWARD LENGTH=959	1.0e-19	48%
RefSeq	Arabidopsis thaliana	NP_194133.1	NIN like protein 7 [Arabidopsis thaliana]	2.0e-19	48%
RefSeq	Populus trichocarpa	XP_002303671.1	predicted protein [Populus trichocarpa]	2.0e-20	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7X9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 304 - 753

Fln protein: MGQY*CVRRKQGIMFILKRLHMEGVQSLLKANFHRRKNVI*AMHKVTAKSFVGSKGFGSPTCISVTSKSSECSQSSSSNHPWSTEAEPNDPVTYACVSPQIFRENGQVYGHKEPGSFPVLKRAYSEQVLSDRGVGLSIRSSSFKCLDMALRSYQNAGVNRKCLQEDSLSSSLNQGLIAKNRSDQGSENIFPAGRLQTGRIIQDDSMLTTVKATYKDDTIRFKLTPHMAFRELCEEVVKRFQLESITINLRYLDDDLEWVLLTCDADLFECIDILKSSGGRIIKLQVQEVCPNIGSSCGSSGGW*

Protein Length: 305

Fln nts: ATGGGTCAGTATTAGTGTGTAAGGAGAAAGCAGGGGATCATGTTCATCCTGAAGCGTTTACACATGGAGGGCGTGCAGTCTCTGTTGAAGGCCAATTTTCACAGGAGGAAGAACGTCATATAAGCAATGCACAAGGTTACAGCTAAGAGCTTTGTTGGGTCAAAGGGATTTGGATCACCCACATGCATCTCTGTGACATCTAAATCTTCAGAGTGTAGCCAAAGCTCAAGTTCAAATCATCCTTGGTCAACTGAAGCTGAACCAAATGATCCAGTCACATATGCATGTGTCAGTCCACAAATATTTAGAGAGAATGGACAGGTTTATGGTCATAAAGAACCAGGTTCTTTTCCTGTTCTAAAAAGGGCATACAGTGAACAAGTCCTGAGTGACAGAGGTGTGGGATTATCTATTAGATCTTCTAGCTTTAAATGTTTGGATATGGCCCTACGCAGTTATCAAAATGCAGGTGTCAACCGGAAATGTCTTCAAGAAGATAGCCTATCAAGCTCCCTAAATCAAGGTTTGATTGCAAAGAACAGAAGTGATCAAGGATCAGAAAATATATTTCCAGCAGGTAGATTGCAAACTGGTAGAATCATTCAAGATGACAGCATGCTAACGACGGTGAAAGCAACATATAAAGATGATACTATTCGTTTCAAATTGACTCCACATATGGCATTTCGAGAACTTTGTGAGGAGGTGGTAAAACGATTCCAGTTGGAGTCAATTACAATTAATCTGAGGTATTTAGATGATGATCTTGAGTGGGTTTTGCTAACTTGTGATGCAGATTTGTTTGAGTGCATTGACATCTTGAAATCGTCAGGCGGACGTATAATTAAGCTTCAAGTCCAGGAAGTATGTCCAAACATTGGAAGCTCCTGCGGGAGCTCTGGGGGATGGTGA___ATCATGAGGTCACGGCATTCTGCTGTCAAATCTTCAAAGATTTGAGCCTAATGGTTCAATTTTGTTTCACATTGTACACTTCTTTCATGGTTAGTCTTACTGCTTGTGGGAAGCACATCTTGTATTTGAAATGGCAGTCAATGCCTGACCACAGTCCAAACATGTATCAACATCTATAATGCAGGAACAACTGTACGTTTCAGTTTTGGCTTCCTGCTGGATAGAATAATTAAAGCAGTTGCTTAAGCTGTGTGATTATTTATACTATGGACAAGATGTTTAGCCGGATTTTATTCGGGAAGTCGTGGATATTTTCCTAAACAGGGCTGCATATTCTGGCCAGAGTTGGAACCTTTGGGGTTAATTAATAGATTTATACTAC

Fln Alignment:

Contig14749___FRENGQVYGHKEPGSFPVLKRAYSEQVLSDRGVGLSIRSSSFKCLDMALRSYQNAGVNRKCLQEDSLSSSLNQGLIAKNRSDQGSENIFPAGRLQTGRIIQDDSMLTTVKATYKDDTIRFKLTPHMAFRELCEEVVKRFQLESITINLRYLDDDLEWVLLTCDADLFECIDILKSSGGRIIKLQVQEVCPNI
D5A7X9_______________FINNGETSLHKRQATSSILKNTHSETAVNCKRKKLPVESSS----DQKPTDFSGQG---ECLAEAIQSNSRN--LSPQHRCDSRILNL--AG-LQRDRIIQEGNKSTIFKVTYKQDTVRFRLPLNAGVSELHDEVTKRFKLEAGTFDLKYLDDDHEWVLLACDADLQECIGILNLSGGKAIKLVVYDMSSNV

SNPs (tot: 3)

Position	C %	T %	Probability
498	25	75	0.996473
907	10	90	0.90298
1165	10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain