SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14707

Length: 2320 nt

UniGene Fasta

>sp_v3.0_unigene14707
ATGGGGGGCCAGACGAAGTAGAGGAGAGGAGAGGAGATGAATGCATGAATGCAGAAGGAGATTTTTGCTCGGTTGTTCAGTGGAGTAACGCAGGGAAGAGATGCGTTTAAATGCTGGAGGAATTAGTAGCAGGTGAAGTTTTTAAGCACTGGACTTTCTTCTGCACTTGTTGAAGACTTTATCGAGCCAAATCTTGGAACTTTTGGCCTATTATTTGAAAATCTTCGGCGAGGTGTAAAGGCTGCTTTATGAAGCCATTCTGGATGAATTTTATGTAAGCTTCTTGGTTTTCGTTAGCGATTTGACTCAAATTGGCTGGAGTTTTAGCCGGTATTTTAAATGTTTTCTTTAAAGGGGAAGGTTGGGCGATTGGGCTGAGTTGATCAGTTGTTTGAATGATTTAACTTAAATCTTTCGCGTATTGCAGAAGGAATTTTAACTTTCCACCAAAGTCCGGGCTGATTTGGCTTCCTTTGCTGGAGAAGCTAGTTTGAAGGCCATATCGACACGGAAGATGAAGTTTTTTGTAATTTCTTTGGGCGTGAAGAGGCCGATCCATTGGAGTTTCCACTGATCTGTATTACAGAGACTGTATACTGTTTTGTTGGCTAGCGTTACGATGGTTAGCAGCTAACATTTTTATGTAAGCAGAAGGAATCTGGATGATGTTGGGTTCTCTCGGCTACATATTGAAGGATATGGTAATATTCTGGAGATTTTCTGAAAAATCTCAGGATATCCGTGGCTTGCCCTGCGTTTTTCTTTAATCTGCAAGATTTTCTTTGTGTAGCTTGAAGATCTTTAGCAGCTGATAGTTTTGCAGCAGTCGAGGGATTTCTTCAAAATATTAGAGGATTTGAGTAACTGTCTGCTAAATATCGAAGGATTTGGTGATATTTTTATAATTTTCATAGTTTCAAGATATCTCTGGTTGGTTTTTTCCCTTTAAGCTACAGGGCTTTCTTGTGTAACTTGAAGATATTTAGCAGCTGACATTCTTCTGTGGGATTTTGGAGGATTTGGGGGCCTCTGGGCTAATTATCGAAGCATTTGGTAACATTTTTAAAAATTTCTGAGAAGCATCAAGAAATACCTGGCCTGCTTGCCGTTTTCTTTAAGCTGAATGATATTTCTTGTGTAGCATCAATAATTTTCGGAGTTGAAGATTTTCGCTAGGTTCTGCTTCGAGAATTGCAAGTTTCCGAATTAAACTGAAGGATTATTTCTCTTTGGCCGTTGGATTAATATGAAAGAATACATTCACATGGAGAATGCACCGGAAAATCCCATTTGTAAAAGTTTTCTACAATGGGGAAGCCACAAGCGGATGAGATGCGTGAAGATTCACGGAAAGGCCTCGGCGGAAAAAGAGCCCGGGGGGTTGATCAAGAAATCTGCGATTCGGGTCGACAGACGCGTTGTTAGAGCTGAAAAAGAAGGTCTGCTTGCCTCCGTAGACCGAAATCAAGTTAAGTCCGTCCTCAATATCATTGATACAACTGTAGTGCCAAGCACCAACGTACAGTCCTCATTTTCCCCAGAGAAGAGTGACAGATTGCATCATCATCCCATGGTTAATGTCATTACCACAAGGAGTAATAACACCGACGACACAAACAAGACTTCAGCCGATGCAGACACAATGCAAGACAAGACCTCAAAGCCTGAGGCTTTCGTCTGGCCTAAATTCCTTCTCACCCTGTCTCGCAACGAGAAAGAGGAAGATTTCCACAGAATGAAGGGCACGAAATTACCACTGAGGCCTAAAAAACGCGCCAAGCTTATTCAGAGGGCCATCCATTCTGTTACCCCTGGTGGTTGGCTTTGTGACATTTCTCAAGAACGGTACGAGGTCAGAGAAAAGAAGTGCATGAAAAAGAGACCGAGAGGTTTAAAGGGCATGCGGAGTGCAGATAGTGACTCTGGATAAGCAGGCAATTGCTACACAACTGTACTTGTGAAGAGCTGTTAGTTTGCTGAGTGTATCATAAGTAATATTCAATCACAACACTAATTTGTCTGCTGTCCTTTGCTTTCTACCATTGAATTTGTTCTGCTTGAGGAGTAATTTAAAGCCAAGCCCAAGGTGCTTCCAATTAGATGCACCATATCCATCTTAAAAGTTGAAGCCATCATCATGAAATCAAAAAAATGTATAGTCTTGAAATAACATTGACAACTGTCAGGGATGTAATTCTTCTGACCAGAAAGAACAATTCTGGAGCAATATCACTGATCCCTATTCTTGACTTTGGCAGATTTTCAGCTACTGCAATTTTAGAAATTCTTTGTAAACATTTCAAGGAAATTTTAATGATAT

Ace file of the UniGene sp_v3.0_unigene14707

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1639 domain containing protein	-	-	4.0e-15	46%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	44%

Source	Gene names
Sma3	At1g55340; GSVIVT00024817001; GSVIVT00025469001; OJ1362_G11.13; Os05g0556600; OsI_20929; OsJ_13036; OsJ_19498; PHYPADRAFT_132822; PHYPADRAFT_178191; PHYPADRAFT_188233; POPTRDRAFT_260193; POPTRDRAFT_571202; POPTRDRAFT_573929; POPTRDRAFT_708263; POPTRDRAFT_

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1639	IPR012438	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9IPQ6

Fln msg:

Fln protein: MKEYIHMENAPENPICKSFLQWGSHKRMRCVKIHGKASAEKEPGGLIKKSAIRVDRRVVRAEKEGLLASVDRNQVKSVLNIIDTTVVPSTNVQSSFSPEKSDRLHHHPMVNVITTRSNNTDDTNKTSADADTMQDKTSKPEAFVWPKFLLTLSRNEKEEDFHRMKGTKLPLRPKKRAKLIQRAIHSVTPGGWLCDISQERYEVREKKCMKKRPRGLKGMRSADSDSG*

Protein Length: 229

Fln nts: ATGGGGGGCCAGACGAAGTAGAGGAGAGGAGAGGAGATGAATGCATGAATGCAGAAGGAGATTTTTGCTCGGTTGTTCAGTGGAGTAACGCAGGGAAGAGATGCGTTTAAATGCTGGAGGAATTAGTAGCAGGTGAAGTTTTTAAGCACTGGACTTTCTTCTGCACTTGTTGAAGACTTTATCGAGCCAAATCTTGGAACTTTTGGCCTATTATTTGAAAATCTTCGGCGAGGTGTAAAGGCTGCTTTATGAAGCCATTCTGGATGAATTTTATGTAAGCTTCTTGGTTTTCGTTAGCGATTTGACTCAAATTGGCTGGAGTTTTAGCCGGTATTTTAAATGTTTTCTTTAAAGGGGAAGGTTGGGCGATTGGGCTGAGTTGATCAGTTGTTTGAATGATTTAACTTAAATCTTTCGCGTATTGCAGAAGGAATTTTAACTTTCCACCAAAGTCCGGGCTGATTTGGCTTCCTTTGCTGGAGAAGCTAGTTTGAAGGCCATATCGACACGGAAGATGAAGTTTTTTGTAATTTCTTTGGGCGTGAAGAGGCCGATCCATTGGAGTTTCCACTGATCTGTATTACAGAGACTGTATACTGTTTTGTTGGCTAGCGTTACGATGGTTAGCAGCTAACATTTTTATGTAAGCAGAAGGAATCTGGATGATGTTGGGTTCTCTCGGCTACATATTGAAGGATATGGTAATATTCTGGAGATTTTCTGAAAAATCTCAGGATATCCGTGGCTTGCCCTGCGTTTTTCTTTAATCTGCAAGATTTTCTTTGTGTAGCTTGAAGATCTTTAGCAGCTGATAGTTTTGCAGCAGTCGAGGGATTTCTTCAAAATATTAGAGGATTTGAGTAACTGTCTGCTAAATATCGAAGGATTTGGTGATATTTTTATAATTTTCATAGTTTCAAGATATCTCTGGTTGGTTTTTTCCCTTTAAGCTACAGGGCTTTCTTGTGTAACTTGAAGATATTTAGCAGCTGACATTCTTCTGTGGGATTTTGGAGGATTTGGGGGCCTCTGGGCTAATTATCGAAGCATTTGGTAACATTTTTAAAAATTTCTGAGAAGCATCAAGAAATACCTGGCCTGCTTGCCGTTTTCTTTAAGCTGAATGATATTTCTTGTGTAGCATCAATAATTTTCGGAGTTGAAGATTTTCGCTAGGTTCTGCTTCGAGAATTGCAAGTTTCCGAATTAAACTGAAGGATTATTTCTCTTTGGCCGTTGGATTAAT_-_ATGAAAGAATACATTCACATGGAGAATGCACCGGAAAATCCCATTTGTAAAAGTTTTCTACAATGGGGAAGCCACAAGCGGATGAGATGCGTGAAGATTCACGGAAAGGCCTCGGCGGAAAAAGAGCCCGGGGGGTTGATCAAGAAATCTGCGATTCGGGTCGACAGACGCGTTGTTAGAGCTGAAAAAGAAGGTCTGCTTGCCTCCGTAGACCGAAATCAAGTTAAGTCCGTCCTCAATATCATTGATACAACTGTAGTGCCAAGCACCAACGTACAGTCCTCATTTTCCCCAGAGAAGAGTGACAGATTGCATCATCATCCCATGGTTAATGTCATTACCACAAGGAGTAATAACACCGACGACACAAACAAGACTTCAGCCGATGCAGACACAATGCAAGACAAGACCTCAAAGCCTGAGGCTTTCGTCTGGCCTAAATTCCTTCTCACCCTGTCTCGCAACGAGAAAGAGGAAGATTTCCACAGAATGAAGGGCACGAAATTACCACTGAGGCCTAAAAAACGCGCCAAGCTTATTCAGAGGGCCATCCATTCTGTTACCCCTGGTGGTTGGCTTTGTGACATTTCTCAAGAACGGTACGAGGTCAGAGAAAAGAAGTGCATGAAAAAGAGACCGAGAGGTTTAAAGGGCATGCGGAGTGCAGATAGTGACTCTGGATAA___GCAGGCAATTGCTACACAACTGTACTTGTGAAGAGCTGTTAGTTTGCTGAGTGTATCATAAGTAATATTCAATCACAACACTAATTTGTCTGCTGTCCTTTGCTTTCTACCATTGAATTTGTTCTGCTTGAGGAGTAATTTAAAGCCAAGCCCAAGGTGCTTCCAATTAGATGCACCATATCCATCTTAAAAGTTGAAGCCATCATCATGAAATCAAAAAAATGTATAGTCTTGAAATAACATTGACAACTGTCAGGGATGTAATTCTTCTGACCAGAAAGAACAATTCTGGAGCAATATCACTGATCCCTATTCTTGACTTTGGCAGATTTTCAGCTACTGCAATTTTAGAAATTCTTTGTAAACATTTCAAGGAAATTTTAATGATAT

Fln Alignment:

Contig14707___ENAPENPICKS-----FLQWGSHKRMRCVKIHGKASAEKEPGGLIK-KSAIRVDRRVVRA---EKEGLLASVDRNQVKSVLNIIDTTVVPSTNVQSSFSPEKSDRLHHHPMVNVITTRSN-NTDDTNKTSADADTMQDKTSKPEAFVWPKFLLTLSRNEKEEDFHRMKGTXXXXXXXXXXXXIQRAIHSVTPGGWLCDISQERYEVREKKCMKKRPRGLKGMRSADSDS
B9IPQ6_______________EERNQRASCKSLEPEFFLQWGNKKRLRCVRVRDPQIISRRSDGVFRRKITSRIDRFVVSSATTEKDTSLLQSNRITRNSEAAVLRSSVAEN---RKSSSPEKEDRYY--------TTRGSVGLDENGKVSMDGNNGDDK-----AHVWPKLYTTLSSKEKEEDFMAMKGCKLPQRPKKRAKIIQRSLLLVSPGAWLTDMCQERYEVREKKSSKKRPRGLKAMGSMESDS

SNPs (tot: 3)

Position	A %	G %	T %	Probability
209	16		83	0.994512
212		16	83	0.994512
213	83		16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
20	37	AGAGG AGAGG AGAGG AGA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain