SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14680

Length: 234 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14680

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FAP multi-domain protein	-	-	1.0e-10	47%
Sma3	Putative glycine-rich cell wall structural protein	-	-	1.383e-10	-

Source	Gene names
Sma3	AT1G49750; At1g49750; At2g32690; At2g36120; At3g17050; At3g22800; B1103C09.9; CHLREDRAFT_10029; CHLREDRAFT_195828; CHLREDRAFT_195849; CHLREDRAFT_196403; CHLREDRAFT_34127; F14J22.4; FH16; GAS30; GAS31; GOX16; GRP; GSVIVT00038494001; H0315A08.9; HRGP gene;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	extracellular space	GO:0005615	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	outer membrane	GO:0019867	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	hedgehog receptor activity	GO:0008158	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transition metal ion binding	GO:0046914	Molecular Function	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cellular component organization	GO:0016043	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-
Sma3	actin cytoskeleton organization	GO:0030036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Prohibitin	IPR000163	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	Band 7 protein	IPR001107	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Peptidase M12B, ADAM/reprolysin	IPR001590	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Blood coagulation inhibitor, Disintegrin	IPR001762	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Actin-binding FH2/DRF autoregulatory	IPR003104	-	-
Sma3	Polymorphic outer membrane protein repeat	IPR003368	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	NLI interacting factor	IPR004274	-	-
Sma3	Protein of unknown function DUF285, lipoprotein predicted	IPR005046	-	-
Sma3	Peptidase, metallopeptidase	IPR006026	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding	IPR008274	-	-
Sma3	Glycine rich protein	IPR010800	-	-
Sma3	Bacterial surface protein 26-residue repeat	IPR011889	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Peptidase M10B, serralysin, C-terminal	IPR013858	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Actin-binding FH2	IPR015425	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
69			25	50	0.995533
92	40	60			1.0
116	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain