SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14669

Length: 299 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene14669
AATGTTCTTGTCCTGACAAAGAGAGGGCTGCACAAGAAAGACTTGTTGAACCTCTGCTCAGTCTTGCAAAGTCTTATGAAGGAGGGCGGGAAAGTCATGCTCGTATCATTGTTCAATCACTCTTTGAGGAATATCTACATGTTGAAGAACTTTTCAATCAAAATGCACAGGCTGATGTGATTGAAGGTCTTAGACTTCAGCATAAAAAGGATCTTTTAAAGGTGGTAGACATGGTGCTTTCTCATCAGGGAATCAAGAGAAAAACCAAACTGATTTTACGACTAATGGAAGCTCTTGTC

Ace file of the UniGene sp_v3.0_unigene14669 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	acetyl CoA carboxylase [Glycine max]	-	-	1.0e-37	81%
FL-Next	sp=Acetyl-CoA carboxylase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Sma3	Acetyl-CoA carboxylase	-	-	2.84e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acetyl-CoA carboxylase.	EC:6.4.1.2	-	3.158e-15	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid biosynthesis	00061	3.158e-15	%
Sma3	Tetracycline biosynthesis	00253	3.158e-15	%
Sma3	Pyruvate metabolism	00620	3.158e-15	%
Sma3	Propanoate metabolism	00640	3.158e-15	%
Sma3	Carbon fixation pathways in prokaryotes	00720	3.158e-15	%
Sma3	Metabolic pathways	01100	3.158e-15	%
Sma3	Biosynthesis of secondary metabolites	01110	3.158e-15	%

Source	Gene names
Sma3	ACC; ACC-R; ACC-S; ACC1; ACC2; ACCase; ACCase-A; ACCase-B; ACCg8; Acc-1; Acc-2; F15C21.1; F15C21.2; GSVIVT00015269001; LOC_Os10g21910; OSJNBa0073L01.2; OsI_19330; OsI_33225; OsJ_17935; OsJ_31236; PHYPADRAFT_115301; PHYPADRAFT_191193; POPTRDRAFT_559146; PO

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	acetyl-CoA carboxylase activity	GO:0003989	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	biotin binding	GO:0009374	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carboxyl transferase	IPR000022	-	-
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3	Biotin carboxylase, C-terminal	IPR005482	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, N-terminal	IPR011762	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	-
Sma3	Biotin carboxylation domain	IPR011764	-	-
Sma3	Acetyl-CoA carboxylase, central domain	IPR013537	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3		IPR013817	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G36160.1	ACC1, AT-ACC1, EMB22, GK, PAS3 acetyl-CoA carboxylase 1 chr1:13534196-13543773 FORWARD LENGTH=2254	4.99983e-42	76%
RefSeq	Arabidopsis thaliana	NP_001185143.1	acetyl-CoA carboxylase 1 [Arabidopsis thaliana]	6.00036e-42	76%
RefSeq	Populus trichocarpa	XP_002306591.1	predicted protein [Populus trichocarpa]	9.80909e-45	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38970

Fln msg: Distance to subject end: 1287 aas, your sequence is shorter than subject: 99 - 2254

Fln protein: CSCPDKERAAQERLVEPLLSLAKSYEGGRESHARIIVQSLFEEYLHVEELFNQNAQADVIEGLRLQHKKDLLKVVDMVLSHQGIKRKTKLILRLMEALV

Protein Length: 100

Fln nts: AATGTTCTTGTCCTGACAAAGAGAGGGCTGCACAAGAAAGACTTGTTGAACCTCTGCTCAGTCTTGCAAAGTCTTATGAAGGAGGGCGGGAAAGTCATGCTCGTATCATTGTTCAATCACTCTTTGAGGAATATCTACATGTTGAAGAACTTTTCAATCAAAATGCACAGGCTGATGTGATTGAAGGTCTTAGACTTCAGCATAAAAAGGATCTTTTAAAGGTGGTAGACATGGTGCTTTCTCATCAGGGAATCAAGAGAAAAACCAAACTGATTTTACGACTAATGGAAGCTCTTGTC

Fln Alignment:

Contig14669___SCPDKERAAQERLVEPLLSLAKSYEGGRESHARIIVQSLFEEYLHVEELFNQNAQADVIEGLRLQHKKDLLKVVDMVLSHQGIKRKTKLILRLMEALV
Q38970_______________SCDEKERGALERLIEPLMSLAKSYEGGRESHARVIVHSLFEEYLSVEELFNDNMLADVIERMRQLYKKDLLKIVDIVLSHQGIKNKNKLVLRLMEQLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain