SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14597

Length: 227 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene14597
AGAAGGATGAAAAAACTGGCAAGATCGATTCAAGATGGGAATGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCCGAGGAAGAAGGTTTACATCAAAATCAATGAGGATGAAATTGCCAATGATTATCCTTTACCAGCCTTTTATAAGGCAGATGAACATGAAATGGATGAGTATGTCCTTTTCAATGATGATTCATCTGTATTAGCTCCCGAGGATCTTCCCCA

Ace file of the UniGene sp_v3.0_unigene14597 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytosine-specific methyltransferase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RVR7_PHYPA	-	-	3.0e-15	56%
FL-Next	Isoform 3 of DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B	-	-	0.0	53%

Source	Gene names
Sma3	PHYPADRAFT_119929; PpMET1;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA (cytosine-5-)-methyltransferase activity	GO:0003886	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	DNA (cytosine-5)-methyltransferase 1, eukaryote	IPR017198	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49160.1	MET1, MET2, METI, DDM2, DMT01, DMT1 methyltransferase 1 chr5:19932501-19938186 FORWARD LENGTH=1534	6.0e-12	45%
RefSeq	Arabidopsis thaliana	NP_199727.1	DNA (cytosine-5)-methyltransferase 1 [Arabidopsis thaliana]	7.0e-12	45%
RefSeq	Populus trichocarpa	XP_002325288.1	DNA methyltransferase [Populus trichocarpa]	2.0e-16	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B1Q3J6-3

Fln msg: Distance to subject end: 1125 aas, your sequence is shorter than subject: 75 - 1486

Fln protein: RRMKKLARSIQDGNDWKAAKPSRKSPRKKVYIKINEDEIANDYPLPAFYKADEHEMDEYVLFNDDSSVLAPEDLP

Protein Length: 76

Fln nts: AGAAGGATGAAAAAACTGGCAAGATCGATTCAAGATGGGAATGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCCGAGGAAGAAGGTTTACATCAAAATCAATGAGGATGAAATTGCCAATGATTATCCTTTACCAGCCTTTTATAAGGCAGATGAACATGAAATGGATGAGTATGTCCTTTTCAATGATGATTCATCTGTATTAGCTCCCGAGGATCTTCCCCA

Fln Alignment:

Contig14597___KKLARSIQDGNDWKAAKPSRK---SPRKKVYIKINEDEIANDYPLPAFYKADEHEMDEYVLFNDDS
B1Q3J6-3_____________EKLARLLQQEEEWKMMKQRGKRGTTSQKNVYIKISEAEIANDYPLPAYYKPSSQEMDEYIFDSEDS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
181		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain