SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14577

Length: 1283 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14577

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 78 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE0_FUNHY	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Putative pentatricopeptide (PPR) repeat-containing protein	-	-	9.517e-14	-

Source	Gene names
Sma3	At1g08070; At1g09410; At1g11290; At1g20230; At1g25360; At1g56690; At1g68930; At2g03880; At2g22070; At2g27610; At3g02010; At3g23330; At3g24000; At3g46790; At3g49140; At3g49170; At4g02750; At4g13650; At4g16835; At4g33170; At4g33990; At4g37380; At5g09950; At

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G22070.1	pentatricopeptide (PPR) repeat-containing protein chr2:9383602-9385962 FORWARD LENGTH=786	57%
RefSeq	Arabidopsis thaliana	NP_179798.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002310592.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Overlapping hits, possible frame ERROR between 214 and 195, atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning,

Fln protein: CWASLAALEHGRQGHGHIIRIGYEIKIPVQNALVAMYAKCGIIRDARRVFNKMPVRDVVSWNSLxxxxxxxxGFGKEALQLFEQMQQIGLKPNHITFLVVLTACSHAGLVDEGRFYFDCMNRDRCITPTTAHYACMIDLLGRAGRLNEAEDFIRKMAVEPDGRVWAALLGACRIHGDIKLGIHAAECLLQWEPQASATYVLLSNIHAAAGQWDAVARVRKLMKDRGVKKKPGCSWIDVKNRVHAFRVEDRFHPQTTEIYAMLEKLTLQLKDAGYVPDTNFVLFDVDEEHKGHILRHHSEKLAIAFGLINTPQGTPIRVINNLRVCGDCHTAIKLISKIVRREIVVRDSSRFHHFKDGLCSCHDYW*

Protein Length: 367

Fln nts: TTGTTGGGCTAGCCTTGCAGCTTTGGAACATGGGAGGCAAGGCCATGGACACATAATTAGGATTGGGTATGAGATAAAGATACCTGTACAGAACGCCCTTGTTGCCATGTATGCCAAATGTGGCATCATAAGAGATGCACGTCGAGTTTTCAATAAAATGCCTGTGCGGGATGTGGTTTCATGGAACTCTTTGxxxxxxxxxxxxxxxxxxxxxxxxGGGTTTGGCAAGGAAGCCCTCCAACTCTTTGAACAAATGCAGCAGATAGGCTTGAAGCCAAATCACATAACGTTCCTTGTTGTTCTGACTGCGTGCAGCCATGCAGGCCTGGTAGATGAGGGTCGATTCTACTTTGACTGCATGAATCGAGATCGCTGCATCACCCCAACAACAGCCCACTATGCTTGCATGATTGACCTTCTTGGTCGTGCTGGTCGCCTGAATGAGGCAGAGGACTTCATCAGGAAAATGGCAGTTGAACCTGATGGCCGTGTATGGGCTGCACTGCTTGGTGCCTGCAGAATCCATGGCGACATCAAGCTAGGAATACACGCAGCAGAGTGTCTTCTGCAATGGGAACCCCAAGCATCAGCAACATATGTACTGCTTTCAAACATCCATGCTGCAGCTGGACAATGGGATGCAGTGGCAAGAGTTAGAAAATTGATGAAAGATAGAGGGGTTAAAAAGAAGCCAGGATGTAGCTGGATTGACGTTAAGAACAGAGTGCATGCCTTCCGAGTAGAAGACAGATTCCACCCACAAACAACAGAGATCTATGCAATGTTGGAGAAACTCACTCTGCAATTGAAAGACGCAGGATATGTGCCTGACACAAATTTTGTCCTCTTTGATGTGGATGAGGAGCATAAGGGACACATTCTCAGACATCATAGTGAGAAGTTGGCCATTGCTTTTGGTCTTATAAACACACCCCAAGGAACCCCTATTCGTGTGATAAATAATCTTCGTGTATGTGGTGACTGTCACACTGCGATTAAGTTAATCTCCAAGATTGTTCGACGAGAAATAGTCGTCAGGGATTCCAGCCGTTTCCACCATTTCAAGGATGGGTTGTGTTCTTGTCATGATTATTGGTGATGCCAAGTAAAGCAACATACGTGAACAAGCTCAGTAAATCTGAAGGCCTTGTAAAGTTTTGGTTTGCAGTGCCAAACAGAAATGTGCATGGTCCTGGTATTCATTTTCATCAGATGATATTTCACAACGAAAAATACATTTCTGCCTTCTGATATGTGGTGGTCTGGACTGTGTGCTTTGTTGTGA

Fln Alignment:

Contig14577___ASLAALEXXXXXXXXXXXXXYEIKIPVQNALVAMYAKCGIIRDARRVFNKMPVRDVVSWNSLxxxxxxxGFGKEALQLFEQMQQIGLKPNHITFLVVLTACSHAGLVDEGRFYFDCMNRDRCITPTTAHYACMIDLLGRAGRLNEAEDFIRKMAVEPDGRVWAALLGACRIHGDIKLGIHAAECLLQWEPQASATYVLLSNIHAAAGQWDAVARVRKLMKDRGVKKKPGCSWIDVKNRVHAFRVEDRFHPQTTEIYAMLEKLTLQLKDAGYVPDTNFVLFDVDEEHKGHILRHHSEKLAIAFGLINTPQGTPIRVINNLRVCGDCHTAIKLISKIVRREIVVRDSSRFHHFKDGLCSCHDYW
A9P0W0_______________ASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMxxxxxxxGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain