SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14576

Length: 1161 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14576

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Root phototropism protein, putative n=1 Tax=Ricinus communis RepID=B9SKU3_RICCO	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Transposon protein, putative, Mutator sub-class, expressed	-	-	4.695e-11	-

Source	Gene names
Sma3	At1g30440; At3g44820; At5g03250; At5g13600; At5g64330; B1394A07.4; F15A17_280; F26G16.2; F28D10_10; GSVIVT00001901001; GSVIVT00013470001; GSVIVT00018179001; GSVIVT00022105001; GSVIVT00023199001; GSVIVT00028396001; GSVIVT00033839001; JK218; LOC_Os03g43990;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	phototropism	GO:0009638	Biological Process	-
Sma3	blue light signaling pathway	GO:0009785	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3		IPR014778	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30440.1	Phototropic-responsive NPH3 family protein chr1:10759475-10762199 FORWARD LENGTH=665	60%
RefSeq	Arabidopsis thaliana	NP_174332.1	Phototropic-responsive NPH3-like protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002298828.1	predicted protein, partial [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 352 aas, your sequence is shorter than subject: 296 - 648

Fln protein: MLMPSTSMACEKLGSKPDGFERRGQAWFCTSGLPSDIVIEVGAMSFHLHKFPLMSRSGKLAKLIAEYKEDEICCLSLSDIPGGPETFELAAKFCYGMKLEITPHNVAALQCIANYLEMTEEYGEGNLLTKAEGFLDQVVLRSWKDSVQALQSCDGFIQKAEELQIVRKCVDSLAMKACTDPSLIGWPTQEQEGLHSPGGSILWNGISTGARHRHPQSDWWYEDIAVLSLPLFKLLISAMEEKQIRAENIAGALVYYAKKSIPGLTRRQVGNANSGLPLGSAPSEFSQREILETIES

Protein Length: 297

Fln nts: GATGAAAGAGAATGTGGGGATTAAAAGCAGTTGGTCTGTCCTCTTATACATATATTCCTATAACTTATGAGGGTTGCTGTGTCTCTTGCCTATTTGGGAAGTTCTCATCTTAATCCGTGCTTCTCATCGTGTCATTGTCCAGTGAAGAATCTCTGTTTATATGAATGCAGGATTTGCATTCAGCTGACGTTTCCAGTCTGCATGTTTTCTGTTGTTCAAGTTATTTTCAGCAGAAAATCAATGTGCTTTTATTGTTAGCACTAAATGTTTT_-_ATGTTGATGCCTTCAACATCAATGGCTTGTGAGAAGTTGGGCTCCAAACCAGATGGATTTGAAAGAAGAGGACAGGCATGGTTTTGCACAAGTGGACTACCCAGTGATATCGTCATCGAAGTGGGTGCAATGTCTTTCCATTTACACAAGTTTCCTCTGATGTCGAGGAGTGGGAAGTTGGCAAAGCTCATAGCAGAGTATAAGGAAGATGAAATCTGCTGCCTCTCTTTGTCAGACATTCCTGGAGGGCCTGAGACTTTTGAACTTGCTGCCAAATTTTGCTATGGTATGAAATTGGAGATCACGCCCCATAATGTGGCTGCCTTGCAGTGTATTGCTAATTATTTGGAAATGACAGAGGAGTACGGGGAAGGAAATTTATTAACAAAAGCTGAAGGATTTCTTGACCAAGTGGTGCTTCGGAGCTGGAAGGACTCTGTACAAGCCTTGCAGAGTTGTGATGGATTTATTCAGAAAGCAGAAGAGCTGCAAATAGTGCGGAAATGTGTGGATTCTCTTGCAATGAAGGCCTGTACTGATCCCAGCCTTATTGGATGGCCTACACAAGAGCAAGAGGGGCTGCATAGTCCAGGTGGTAGTATTCTCTGGAATGGTATTAGCACAGGGGCAAGACATAGGCATCCTCAATCAGATTGGTGGTATGAAGACATTGCAGTCCTCAGCTTGCCACTGTTCAAGCTTTTAATCTCTGCAATGGAGGAGAAACAAATACGAGCAGAAAATATTGCAGGAGCCCTTGTATATTATGCTAAGAAGTCCATCCCAGGACTCACTAGGAGACAGGTAGGAAATGCAAACTCGGGCCTGCCCTTGGGATCTGCTCCTTCTGAGTTTAGTCAGAGAGAGATCCTGGAGACTATAGAGAGTCT

Fln Alignment:

Contig14576___MACEKLGSKPDGFERRGQAWFCTSGLPSDIVIEVGAMSFHLHKFPLMSRSGKLAKLIAEY-----KEDEICCLSLSDIPGGPETFELAAKFCYGMKLEITPHNVAALQCIANYLEMTEEYGEGNLLTKAEGFLDQVVLRSWKDSVQALQSCDGFIQKAEELQIVRKCVDSLAMKACTDPSLIGWPTQE---QEGLHSPGGSILWNGISTGARHRHPQSDWWYEDIAVLSLPLFKLLISAMEEKQIRAENIAGALVYYAKKSIPGLTRRQVGNANSGLPLGSAPSEFSQREILETIES
B8LPD8_______________MALEKLGSKPDGFQRRGQAWFCTTGLPSDIIIEVEEMFFHLHKFPLISRSGKLSRLISQTPDDDDEEEQSFHIILPDIPGGADAFELAAKFCYGVKLELTPINVTPLRCAAEYLEMTEEFGEGNLILKTEGFLNHVVLRSWKDSVRTLQSCECLMPLAEELNIVKKCVDSIAMKACTDPSLFGWPMTEGMGMQGMQSTKGGVLWNGINAGTRQRTAHLDWWHEDVAELSLPFYKRVISAMEAKGIRQESIAGAVMYYAKKFIPGLTRRQ-GIAKT-LSLTSAPCEADQRELLETIES

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
215			33	66	0.997452
278	66	33			0.997452
1001	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain