SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14568

Length: 3986 nt

UniGene Fasta

>sp_v3.0_unigene14568
ATGGGGATGCATTAGCGCATATAAGGAAATGGAAGTAAAGTCTGGTTGGGCATACAAAACAATGGGCCAGCTTTCTTTGCCCGCCCGCAAGTCGGGCAATATGACCGAACTGCCCAAGCTGCCCGCTGCCCTCACGGAAGCAGCGCTGCTCACCCAGTCCCCCGCAGTGCGATTCGCGACGAAGAATTGAGCGTTTACCGGTTTGGAGTAGAATATCTCGTGGGTTGCTGGATCATCAGTCAATCCACTCCTCAAATTGAGGGGCAATAAGCAAAGCAGACATGGAACGATACAGTAGAAGTGGTGGAGAGAACCGGGGGGATACTGGGGCAAGAGAACAATCCTCATCTAGGTGGGTCGATGGGAATGATGGACAGGGAGGAGATCAGGAGGTTGAGGTGGAGGTGGAGGCGGAGTCCTCCTCTTCCTCTTCCTCATATAATCTATGGTGCAATGGGGATGAAGATGGGGCTATGGAACAGCATAGGCTAATCAGAACAGAGCCCATATTGGATTCATTTGACGTCGAAGCCATGGACGTACCCAGTGCCCATAAATTCAATTCCAAGGAACTAACCATGGGACACACTCTCCGACTGGCCTTCCAGACTCTTGGAGTGGTATATAGCGATGTGGGCACCAGTCCATTGTATGTTTTTAGTGGAGTGTTCAGCAAGGCTCCCATTCGTGGAGAGAAAGATGTTCTGGGTGCACTGTCACTAATTTTGTACACTCTAACGCTTATTCCGTTGATTAAATATGCATTCATTGTTCTGCAAGCCAATGATAATGGTGAAGGTGGCACGTTTGCATTATATTCTCTAATCTGCAGGTATGCAAAGGTCAGTTTGTTCCCTAACCAGCAGCCATCAGATGCACATATTTCAAGTTTTAGGCTCAAGTTGCCTACACCAGAGCTGGAAAGATCCCTGAAAATCAAGGAGTGCTTAGAGAAACATTCAGTACTGAAAACTCTGTTGCTACTTTTAGTTCAGGTTGGAGCTTCTATGCTGATAGTAGATGGCATCCTTACCCCTGCAATTTCAGTCACATCAGCTATGAGTGGGCTGACAGAGCCTGTTCCCGGTTTTAGCAAAGAAGCGGCTGTGATGGCATCTATTGCGTTTCTTGTAATCTTGTTCAGCATACAGAGGTTTGGCACGAGCAAAGTGGGACTTGTTTATGGCCCAGTTCTATTCATATGGTTTCTTTCCCTTGGGTTGGTTGGTCTCTACAACATTATTTCATATGACAATAGTGTTTTCAAGGCGTTCAATCCAGTCTATATCTATTACTTCTTTTCGAATAATCCAAATCGAGCATGGTTTTCTCTTGGAGGCTGTTTGTTGTGCATAACAGGAGCTGAAGCAATGTTTGCTGACTTGGGTCACTTCTCAGTGAGGTCTGTCCAGATAGCCTTCACATTTTTGGTGTTCCCATGTCTGTTACTGGCATATATGGGCCAAGCTGCATTTCTTATAACAAATCCAAGCATGGCAGAACGGGCATTCTACGCTTCAATTCCAGCTGGTGCGTTCTGGCCAATTCTTGTGCTAGCCACTACTGCTGCTCTGATCGCAAGTCAAGCTATGATTTCAGCAACATTTTCATGGATCAAACAGAAAACGACGCTTCAGTGCCACCAAAGGCTTAAAGTCATACACACCTCAAAGCGGTTTATGGGCCAGGTCTACATTCCAATCATAAACTGGTTCCTGATGATTCTTTGCATCATTGTAGCTGCCACCTTTAAGGGCACAAACGAGATAGGAAATGCATATGGGATTTCTGAGGTGGGAGTAATGATGGTGACCACAGTGTTAGTGACTATTGTCATGCTTCTGATATGGCAAACCAACCTATTCTTGGCACTGTGTTTCCTGGTTTTCTTTCTAACCATTGAACTAACTTATTTTGTAGCTGTATTGATGAAAGTGAGTGATGGTAGTTGGCTCCCATTGGTTGTAGCCTCCTGCCTCCTTTTTGTAATGTACATCTGGAACTATGGAAGTGTCCTAAAGTATCAAAGTGAAGTTAGGATGAAAATCTCAATGGATTTGATGCTAGAGCTGGGTTCAAATCTTGGCACAGTAAGAGTTCCTGGAATTGGGTTGGTCTATAATGAACTTGTTCATGGAATTCCAGCAATATTTGGGAATTTTGTAACAAGTCTCCCAGCTATTCATTCCACCATAATATTTGTATGTATCAAGTATGTTCCAGTTCCTGTTGTGACACAAGGTGAGCGCTTTCTATTCAGACGAGTCTGTCCAAGAAACTACAACATGTTTCGCTGTATTGCAAGGTATGGTTACAAAGATGTCCGAAAGGAGAATCATCAAGCCTTCGAACAACTACTTATTGAAAGTCTTGAAAAGTTTCTCCGTAGGGAGGCTGAAGATTTCTCATTAGAGAGTGATGATCTGTATACTTCAGAATCAGAGAATGAAACAAAGGATCCTAAACTACTAGGAGAAATAAGCTGCAGCCTCGATTCCCTGGAGGCACCCCTAATGGGAAATTACAGGGGTTCAAGGAATTTCTTTGCTCCTCCAGAGTCACTACCAGAAGCTAGTACCTCATCAGGGTTGCCCACAAGTGTTGTGCCCATGGATGATCAAAGTCTTGAGTATGAGCTTTCATCCATGCATAAAGCCAAAGAATCAGGAGTTGTATATCTCTTGGGTCATGGAGATATTAGAGCTAGAAAGGATTCTTGGTTTATCAAGAAATTGGTTATTAATTACTTCTATGCTTTTTTGAGGAAAAATTGCAGAGCAGGCATTGCAACACTACGTGTTCCTCACACTAATCTTCTGCAGGTTGGCATAACTCACATGGTGTGAGATCTTGAAGCTACAGAGTCACAGACTTTAAGCTTGCCCAAAAGGATCAACAAAAGAATGCTTCTGCATAGGATGTGATGAGAGAAATGGGAGAATCTGGTGACAGAAAACACATTGAAATATAACATTGAACTGCACATTGGATTTGCATCTGCTGCTCCATAAACCATATCTAACTGTATTTGATAGGAAATCATACAGATTTTGACTTTAGGATATGGCAGTTGAGGGGAATGCAGCATTTGCTACTTGTCATATAGTGATGTTCAATTTAATTGTCTTCAGTATCTACCATTAGGGCTAATAATAAGAGGGTTTGCCTCAGACGCGTTGGCTACCACAGAGATCAAACCTGGCGAAGTCGGTATTGTTTCAGGAATCCCAGATCAGCACTTAAGCAGAAGGGTGATAATATACTCCCCTGGTAGGACAGCTACACAGCAAGGGTCTGGAAAAGTCGGAAAATGGAAAATCAATTTTGTGTCAACACAAAAGTGGGAGAACCCATTGATGGGATGGACATCAACAGGTGATCCATATGCAAACGTTGGAGAGGCTGGGCTTTATTTTAAAAGCAAAGAAGCTGCTCAAAGTTTTGCTGAGAAACATGGCTGGGATTATGTGGTTAAGGATCCTCACACCCCGCTTCTAAGGCCTAAAGCATATGCGGATAATTTTAAATGGAAGGGTCCTCCAGTTTCCGAGGATTAATGATACCTTTCCAGAGGAAAAAGTGAATGACTAGAATTTTTAACGAGTGTCTGAAGTTGATGAATCTTCAGTAGCACAATACACATTGTGGTTTTTAGTGAGGATCTGAAGGTGTAGGCAGTTTCGCACTAAGAGAACTTTGATTTCCTGATACTTGGTCTTCATTCTTCAGCTACATGTTGTCATTACTAGTCCATGACATAGAAGGATCCCATTTGAAAGGTGTCAGAATTCCATGCTATAGAAGATCATATTTGAAGAAGTTTCAGACTATGTGACAAATGACTCGAGTCTAAAGTGATCGGCAGATTGAGCATTTACTATGAATAAGTGTATTAAATACTGAGGAGATTCAAGCTTTATACTACTAAATAAAATGTGCTTTATTCCATGAATTGATGCACATCAAGTTTATAAAATCCATTTATT

Ace file of the UniGene sp_v3.0_unigene14568

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9SZS0_RICCO	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Potassium transporter, putative	-	-	1.429e-32	-

Source	Gene names
Sma3	At1g31120; At1g60160; At2g30070; At2g35060; At2g40540; At3g02050; At4g13420; At4g19960; At4g23640; At4g33530; At5g09400; At5g14880; B1026C12.31-1; CHLREDRAFT_121823; CHLREDRAFT_123407; F17M5.1; F18F4.60; F1C9.17; F23F1.18; F9D16.110; GSVIVT00000271001; GS

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium:sodium symporter activity	GO:0009674	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	oxidoreductase activity, acting on NADH or NADPH	GO:0016651	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	cell tip growth	GO:0009932	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial	IPR006885	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G09400.1	KUP7 K+ uptake permease 7 chr5:2916377-2920604 FORWARD LENGTH=858	58%
RefSeq	Arabidopsis thaliana	NP_568213.2	Potassium transporter 7 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002303189.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMD2

Fln msg: W1: There is no M at the beginning,

Fln protein: GECSICYLSYSDVQFNCLQYLPLGLIIRGFASDALATTEIKPGEVGIVSGIPDQHLSRRVIIYSPGRTATQQGSGKVGKWKINFVSTQKWENPLMGWTSTGDPYANVGEAGLYFKSKEAAQSFAEKHGWDYVVKDPHTPLLRPKAYADNFKWKGPPVSED*

Protein Length: 162

Fln nts: ATGGGGATGCATTAGCGCATATAAGGAAATGGAAGTAAAGTCTGGTTGGGCATACAAAACAATGGGCCAGCTTTCTTTGCCCGCCCGCAAGTCGGGCAATATGACCGAACTGCCCAAGCTGCCCGCTGCCCTCACGGAAGCAGCGCTGCTCACCCAGTCCCCCGCAGTGCGATTCGCGACGAAGAATTGAGCGTTTACCGGTTTGGAGTAGAATATCTCGTGGGTTGCTGGATCATCAGTCAATCCACTCCTCAAATTGAGGGGCAATAAGCAAAGCAGACATGGAACGATACAGTAGAAGTGGTGGAGAGAACCGGGGGGATACTGGGGCAAGAGAACAATCCTCATCTAGGTGGGTCGATGGGAATGATGGACAGGGAGGAGATCAGGAGGTTGAGGTGGAGGTGGAGGCGGAGTCCTCCTCTTCCTCTTCCTCATATAATCTATGGTGCAATGGGGATGAAGATGGGGCTATGGAACAGCATAGGCTAATCAGAACAGAGCCCATATTGGATTCATTTGACGTCGAAGCCATGGACGTACCCAGTGCCCATAAATTCAATTCCAAGGAACTAACCATGGGACACACTCTCCGACTGGCCTTCCAGACTCTTGGAGTGGTATATAGCGATGTGGGCACCAGTCCATTGTATGTTTTTAGTGGAGTGTTCAGCAAGGCTCCCATTCGTGGAGAGAAAGATGTTCTGGGTGCACTGTCACTAATTTTGTACACTCTAACGCTTATTCCGTTGATTAAATATGCATTCATTGTTCTGCAAGCCAATGATAATGGTGAAGGTGGCACGTTTGCATTATATTCTCTAATCTGCAGGTATGCAAAGGTCAGTTTGTTCCCTAACCAGCAGCCATCAGATGCACATATTTCAAGTTTTAGGCTCAAGTTGCCTACACCAGAGCTGGAAAGATCCCTGAAAATCAAGGAGTGCTTAGAGAAACATTCAGTACTGAAAACTCTGTTGCTACTTTTAGTTCAGGTTGGAGCTTCTATGCTGATAGTAGATGGCATCCTTACCCCTGCAATTTCAGTCACATCAGCTATGAGTGGGCTGACAGAGCCTGTTCCCGGTTTTAGCAAAGAAGCGGCTGTGATGGCATCTATTGCGTTTCTTGTAATCTTGTTCAGCATACAGAGGTTTGGCACGAGCAAAGTGGGACTTGTTTATGGCCCAGTTCTATTCATATGGTTTCTTTCCCTTGGGTTGGTTGGTCTCTACAACATTATTTCATATGACAATAGTGTTTTCAAGGCGTTCAATCCAGTCTATATCTATTACTTCTTTTCGAATAATCCAAATCGAGCATGGTTTTCTCTTGGAGGCTGTTTGTTGTGCATAACAGGAGCTGAAGCAATGTTTGCTGACTTGGGTCACTTCTCAGTGAGGTCTGTCCAGATAGCCTTCACATTTTTGGTGTTCCCATGTCTGTTACTGGCATATATGGGCCAAGCTGCATTTCTTATAACAAATCCAAGCATGGCAGAACGGGCATTCTACGCTTCAATTCCAGCTGGTGCGTTCTGGCCAATTCTTGTGCTAGCCACTACTGCTGCTCTGATCGCAAGTCAAGCTATGATTTCAGCAACATTTTCATGGATCAAACAGAAAACGACGCTTCAGTGCCACCAAAGGCTTAAAGTCATACACACCTCAAAGCGGTTTATGGGCCAGGTCTACATTCCAATCATAAACTGGTTCCTGATGATTCTTTGCATCATTGTAGCTGCCACCTTTAAGGGCACAAACGAGATAGGAAATGCATATGGGATTTCTGAGGTGGGAGTAATGATGGTGACCACAGTGTTAGTGACTATTGTCATGCTTCTGATATGGCAAACCAACCTATTCTTGGCACTGTGTTTCCTGGTTTTCTTTCTAACCATTGAACTAACTTATTTTGTAGCTGTATTGATGAAAGTGAGTGATGGTAGTTGGCTCCCATTGGTTGTAGCCTCCTGCCTCCTTTTTGTAATGTACATCTGGAACTATGGAAGTGTCCTAAAGTATCAAAGTGAAGTTAGGATGAAAATCTCAATGGATTTGATGCTAGAGCTGGGTTCAAATCTTGGCACAGTAAGAGTTCCTGGAATTGGGTTGGTCTATAATGAACTTGTTCATGGAATTCCAGCAATATTTGGGAATTTTGTAACAAGTCTCCCAGCTATTCATTCCACCATAATATTTGTATGTATCAAGTATGTTCCAGTTCCTGTTGTGACACAAGGTGAGCGCTTTCTATTCAGACGAGTCTGTCCAAGAAACTACAACATGTTTCGCTGTATTGCAAGGTATGGTTACAAAGATGTCCGAAAGGAGAATCATCAAGCCTTCGAACAACTACTTATTGAAAGTCTTGAAAAGTTTCTCCGTAGGGAGGCTGAAGATTTCTCATTAGAGAGTGATGATCTGTATACTTCAGAATCAGAGAATGAAACAAAGGATCCTAAACTACTAGGAGAAATAAGCTGCAGCCTCGATTCCCTGGAGGCACCCCTAATGGGAAATTACAGGGGTTCAAGGAATTTCTTTGCTCCTCCAGAGTCACTACCAGAAGCTAGTACCTCATCAGGGTTGCCCACAAGTGTTGTGCCCATGGATGATCAAAGTCTTGAGTATGAGCTTTCATCCATGCATAAAGCCAAAGAATCAGGAGTTGTATATCTCTTGGGTCATGGAGATATTAGAGCTAGAAAGGATTCTTGGTTTATCAAGAAATTGGTTATTAATTACTTCTATGCTTTTTTGAGGAAAAATTGCAGAGCAGGCATTGCAACACTACGTGTTCCTCACACTAATCTTCTGCAGGTTGGCATAACTCACATGGTGTGAGATCTTGAAGCTACAGAGTCACAGACTTTAAGCTTGCCCAAAAGGATCAACAAAAGAATGCTTCTGCATAGGATGTGATGAGAGAAATGGGAGAATCTGGTGACAGAAAACACATTGAAATATAACATTGAACTGCACATTGGATTTGCATCTGCTGCTCCATAAACCATATCTAACTGTATTTGATAGGAAATCATACAGATTTTGACTTTAGGATATGGCAGTTGAGGGGAATGCAGCATTTGCTACTTGTCATATAGTGATGTTCAATTTAATTGTCTTCAGTATCTACCATTAGGGCTAATAATAAGAGGGTTTGCCTCAGACGCGTTGGCTACCACAGAGATCAAACCTGGCGAAGTCGGTATTGTTTCAGGAATCCCAGATCAGCACTTAAGCAGAAGGGTGATAATATACTCCCCTGGTAGGACAGCTACACAGCAAGGGTCTGGAAAAGTCGGAAAATGGAAAATCAATTTTGTGTCAACACAAAAGTGGGAGAACCCATTGATGGGATGGACATCAACAGGTGATCCATATGCAAACGTTGGAGAGGCTGGGCTTTATTTTAAAAGCAAAGAAGCTGCTCAAAGTTTTGCTGAGAAACATGGCTGGGATTATGTGGTTAAGGATCCTCACACCCCGCTTCTAAGGCCTAAAGCATATGCGGATAATTTTAAATGGAAGGGTCCTCCAGTTTCCGAGGATTAA___TGATACCTTTCCAGAGGAAAAAGTGAATGACTAGAATTTTTAACGAGTGTCTGAAGTTGATGAATCTTCAGTAGCACAATACACATTGTGGTTTTTAGTGAGGATCTGAAGGTGTAGGCAGTTTCGCACTAAGAGAACTTTGATTTCCTGATACTTGGTCTTCATTCTTCAGCTACATGTTGTCATTACTAGTCCATGACATAGAAGGATCCCATTTGAAAGGTGTCAGAATTCCATGCTATAGAAGATCATATTTGAAGAAGTTTCAGACTATGTGACAAATGACTCGAGTCTAAAGTGATCGGCAGATTGAGCATTTACTATGAATAAGTGTATTAAATACTGAGGAGATTCAAGCTTTATACTACTAAATAAAATGTGCTTTATTCCATGAATTGATGCACATCAAGTTTATAAAATCCATTTATT

Fln Alignment:

Contig14568___LIIRGFASDALATTEIKPGEVGIVSGIPDQHLSRRVIIYSPGRTATQQGSGKVGKWKINFVSTQKWENPLMGWTSTGDPYANVGEAGLYFKSKEAAQSFAEKHGWDYVVKDPHTPLLRPKAYADNFKWKGPPVSED
A9NMD2_______________LIVRGFASDALSTAEIKSGEVGIVSGIPEQHLRRRVIIYSPGRTATQQGSGKLGKWKINFVSTQKWENPLMGWTSTGDPYANVGEAGLYFKSKEAAQSFAEKHGWEYVVKDPHTPLLRPKAYADNFKWKGPPVSED

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
132	33	66			0.997452
348	25	75			0.996473
350		75		25	0.996473
2154	85		14		0.993533
2351		18		81	1.0
2495		14		85	0.999981
2815	85	14			0.993533
2836	87			12	0.992554
2837		87	12		0.992554
2838			12	87	0.992554
2839		87	12		0.992554
2936	87		12		0.992554
2937	87		12		0.992554
2994	86		13		0.999973
3110	8		92		0.999718
3146		11		88	0.999937

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain