SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14528

Length: 376 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene14528
AATGTTGATTGATGGAGTGGTGGAAGATGCATTGCATAATGCAAATTTGACACCATTTGTTCTTTCTGCAGTGGCTGTGACTATTTTTGGTACCTGGTTTAAGCCTATGCTTACGTGTTGGTGTGAGAAAAGCAAGACTGATAGCTGGAAAACACAATTTGCCAATGGTTGGAGTCCATCACATGGAGGCGCATGCTTTAGTTGCTAGGTTGACAGAAAAGGAGTTGCAATTTCCATTCCTGGCCCTTTTAATATCTGGTGGTCACAATCTTCTTATCCTAGCGCAAAGTGTTGGTCGATATGTACAACTAGGTACAACAATAGATGATGCAATTGGAGAGGCATATGACAAGACAGCAAGGTGGCTTGGACTCGA

Ace file of the UniGene sp_v3.0_unigene14528 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycoprotease 1 [Arabidopsis thaliana] gb\|AAL36220.1\| putative O-sialoglycoprotein endopeptidase [Arabidopsis thaliana] gb\|AAK00530.1\| sialoglycoprotease GCP1 [Arabidopsis thaliana] gb\|AAB82636.2\| putative O-sialoglycoprotein endopeptidase [Arabidopsis th	-	-	3.00018e-42	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%

Source	Gene names
Sma3	At2g45270; CHLREDRAFT_121180; GCP1; GSVIVT00026401001; LOC_Os12g29990; MICPUCDRAFT_2716; MICPUN_69157; MtrDRAFT_AC155883g34v2; OSTLU_31766; OsI_01509; OsI_38344; OsJ_01410; OsJ_36105; Ot05g03100; PHATRDRAFT_9987; PHYPADRAFT_186936; POPTRDRAFT_1097965; POP

Source	GOs	Term	Type	Identity
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Peptidase M22, glycoprotease	IPR000905	-	-
Sma3	Diguanylate phosphodiesterase, EAL domain	IPR001633	-	-
Sma3	tRNA transferase Trm5/Tyw2	IPR003402	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3		IPR009180	-	-
Sma3		IPR017442	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	Peptidase M22, glycoprotease, subgroup	IPR017861	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45270.1	GCP1 glycoprotease 1 chr2:18666583-18669332 FORWARD LENGTH=480	79%
RefSeq	Arabidopsis thaliana	NP_566039.1	glycoprotease 1 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002320052.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NN15

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 189 aas, your sequence is shorter than subject: 124 - 360

Fln protein: C*LMEWWKMHCIMQI*HHLFFLQWL*LFLVPGLSLCLRVGVRKARLIAGKHNLPMVGVHHMEAHALVARLTEKELQFPFLALLISGGHNLLILAQSVGRYVQLGTTIDDAIGEAYDKTARWLGL

Protein Length: 125

Fln nts: AATGTTGATTGATGGAGTGGTGGAAGATGCATTGCATAATGCAAATTTGACACCATTTGTTCTTTCTGCAGTGGCTGTGACTATTTTTGGTACCTGGTTTAAGCCTATGCTTACGTGTTGGTGTGAGAAAAGCAAGACTGATAGCTGGAAAACACAATTTGCCAATGGTTGGAGTCCATCACATGGAGGCGCATGCTTTAGTTGCTAGGTTGACAGAAAAGGAGTTGCAATTTCCATTCCTGGCCCTTTTAATATCTGGTGGTCACAATCTTCTTATCCTAGCGCAAAGTGTTGGTCGATATGTACAACTAGGTACAACAATAGATGATGCAATTGGAGAGGCATATGACAAGACAGCAAGGTGGCTTGGACTCGA

Fln Alignment:

Contig14528___PGLSLCLRVGVRKARLIAGKHNLPMVGVHHMEAHALVARLTEKELQFPFLALLISGGHNLLILAQSVGRYVQLGTTIDDAIGEAYDKTARWL
A9NN15_______________PGMGAPLQVSAVVVRMLSQLWKKPIVGVNHCVAHIEMGRVVTAA--HDPVVLYVSGG-NTQVIAYSEGRYRIFGETIDIAVGNCLDRFGRVL

SNPs (tot: 6)

Position	A %	C %	T %	Probability
257		80	20	0.995493
258		80	20	0.995493
287	50	50		1.0
318	33		66	0.997452
321	66		33	0.997452
322	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain