SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14502

Length: 2304 nt

UniGene Fasta

>sp_v3.0_unigene14502
CCGAGAAAGTAATCGGTTAAAAGAGAAAGAAACTTGTGTGGTATGTAATGCCAAATACTGCAGCAATTGTATACTCAGAGCAATGGGGTCAATGCCTGAAGGGCGCAAATGTGTAAGCTGCATTGGCATGCCTATTGATGAATCAAAGCGGTCGAGTTTGGGTAAAAGCTCAAGAGTGTTGAGCCATCTCCTAAGTGCCTTAGAGGTGCAACAAATCATGAAGGCTGAAAGGAATGCCCGGCAAATCAATTGCGACCAGAACATCTCAGTGTGAATGGAAGGCCACTTTGGCCAGAAGAAATGGCTGTTCTACTTGGTTGTCCTAATCCACCCCGTAAATTAAAGCCTGGGAACTATTGGTATGATAAAGTATCTGGATTTTGGGGCGTGGTAGGCCAGAAGCCAAGTCAGATCATAAGTCCACACTTGAATGTAGGGGCTGATCTTCAAGCTGATGCGAGTGGTGGCAAGACAAAGGTTTTTATTAATGGGCGTGAAATTACTAAAACGGAACTCAAGATGCTGACGATGACAGGTGTGCAGTGTGCAGGTGAATCACACTTTTGGCTTAATGCAGATGGTTCATATCAAGAGGAAGGTCATAATATCATTAGAGGAAATATATGGGGCAAGACATATAAAGAGGAAGGTCACAACATCGTTAAAGGAAATATATGGTGCAAGGCAACAACGCGGCTTTTATGCACTTTACTATCATTGCCTACACCTCGTGGAGATTTTATTGGTGGAGCAGCAGATGCGAATAATCAGTCAAACAGATTGCTTCCTGAATACCTAGAGCCAAAGAAAGTTCAAAAGCTTTTATTGCTTGGATATCAAGGATCTGGTACTAGTACCATTTTTAAGCAGGCAAGAATTATATACAAGGGTGACATACTTTCAGAGGAAGAGCTGCAAAATATTAAGCTGATGATACAAAGCAACCTGTACAAATACCTTAGTATCTTGCTAGAGGCTCGTGAGCGTTTTGAGGAAGAAAGTTTGACAGAAAGAGATCACAATGCACAGGATCGACCTATCTCATCAGGGGAGAGTGAACAAGAAGCTGATGTTCAAAGTGTTTATTCCATCCAACCGAGATTGAAGGCCTTTTCTGACTGGCTTCTGAAAATTGTGGCGATGGGGGATTTTGATAACTTTTTCCCAGCTGCCACACGTGAGTATGCTCCTTTGGTTGAGGAATTATGGAGGGACCCTGCAATTCAGGCGACATATAAAAGAAGAAATGAGCTGCACATGCTTCCCGATGTTGCTGGTTACTTCTTGGGGCAGGTTGCTGCAATAGCCAGTAATGAATATGAGCCTTCTGATGAAGACATTTTATGTGCAGAAGGAGTGACCCAAAGTAATGGGTTAGCTTTTTTTGAATTTTCAATGGATGACAGGAACTCAAATACAGAATTTTACCATGATGGTGTTGATTACCAGTGTCCTCTTGTGAGGTACCAGCTTATCAGGCCGAATGCGAAAGACTTGAATGAAGGCTGCAAATGGCTGGATATGTTTGAGGATGTTCGGGCTGTAATCTTTTGCATTGGTCTCAGTGATTATGACCAGATGTGGGCTGAGAGTAATGGTCACCTCAGAAATAAGATGATCTTGAGCAAAGAGCTATTCGAGAATGTGGTAAAGCACCATTGTTTCAGAAATATGCCAGTTGTGTTATTATTCAACAAATTTGATGTATTTGAGGAAAAAATCAACACAGTTCCTCTTACAACATGCGAGTGGTTCAACGATTTCAATCCTGTCAAGGCACATCATAACAATTCATCGTTGGCTCATCAGGCATACTATTATGTTGCTATGAAATTCAAATTGCTATTCACATCAATTAGCAATCGTAAATTATTTGTAGGGCAAGTCAAAGCTCGAGATAGGGACAGTGTAGAAGAGGCTTTCAAATATATACGGGAGGTCCTGAAGTGGGATGAAGACAGAGAATTTTACAACAATCAGGAGGAGTCCGATTATGACACGAGTTCCTTTTCCCCAAATATAAGGCACGAGGATTGAATATTGTTCCTTTTATTTCTGTACTTAATTATGAGACGGGGATGGGATTCGATGATTCATCATGTAACAGTAGCAAGAAGTCCTCCCGGCCAATTATAAGACAGGAGGATTTTTTCCTAGTTGGTCCTAAGAGTTGTAACATGAATTTTTAGAAGGGATGAAGATGTTGAGCATGTTGCCTAAGCTGGATGAAAATGATTTTTGTAATAGATATATCCTTGCACCAAAGTCATTGGTCAATGGTGGCCCAGTATTGGCATTGGTTAT

Ace file of the UniGene sp_v3.0_unigene14502

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP-binding protein alpha subunit, gna, putative n=1 Tax=Ricinus communis RepID=B9S8Q3_RICCO	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Sma3	GTP-binding protein alpha subunit, gna, putative	-	-	2.329e-16	-

Source	Gene names
Sma3	AT1G31930; AT4g34390; At1g31930; At2g23460; At2g23460/F26B6.11; At4g34390; F5M6.7; GPA1; GSVIVT00006612001; GSVIVT00013154001; GSVIVT00015638001; GSVIVT00036460001; LOC_Os10g02814; LOC_Os11g10050; LOC_Os12g40190; OSJNBa0023I19.15; Os06g0111400; Os10g01178

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	guanyl nucleotide binding	GO:0019001	Molecular Function	-
Sma3	protein ADP-ribosylation	GO:0006471	Biological Process	-
Sma3	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	thigmotropism	GO:0009652	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	response to glucose stimulus	GO:0009749	Biological Process	-
Sma3	response to fructose stimulus	GO:0009750	Biological Process	-
Sma3	response to mannitol stimulus	GO:0010555	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Guanine nucleotide binding protein (G-protein), alpha subunit	IPR001019	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Plant G-protein, alpha subunit	IPR002976	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	G protein alpha subunit, helical insertion	IPR011025	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31930.1	XLG3 extra-large GTP-binding protein 3 chr1:11465832-11468961 FORWARD LENGTH=848	57%
RefSeq	Arabidopsis thaliana	NP_001185125.1	extra-large GTP-binding protein 3 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002326558.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB61

Fln msg: your sequence is longer than subject: 579 - 123

Fln protein: MAVLLGCPNPPRKLKPGNYWYDKVSGFWGVVGQKPSQIISPHLNVGADLQADASGGKTKVFINGREITKTELKMLTMTGVQCAGESHFWLNADGSYQEEGHNIIRGNIWGKTYKEEGHNIVKGNIWCKATTRLLCTLLSLPTPRGDFIGGAADANNQSNRLLPEYLEPKKVQKLLLLGYQGSGTSTIFKQARIIYKGDILSEEELQNIKLMIQSNLYKYLSILLEARERFEEESLTERDHNAQDRPISSGESEQEADVQSVYSIQPRLKAFSDWLLKIVAMGDFDNFFPAATREYAPLVEELWRDPAIQATYKRRNELHMLPDVAGYFLGQVAAIASNEYEPSDEDILCAEGVTQSNGLAFFEFSMDDRNSNTEFYHDGVDYQCPLVRYQLIRPNAKDLNEGCKWLDMFEDVRAVIFCIGLSDYDQMWAESNGHLRNKMILSKELFENVVKHHCFRNMPVVLLFNKFDVFEEKINTVPLTTCEWFNDFNPVKAHHNNSSLAHQAYYYVAMKFKLLFTSISNRKLFVGQVKARDRDSVEEAFKYIREVLKWDEDREFYNNQEESDYDTSSFSPNIRHED*

Protein Length: 580

Fln nts: CCGAGAAAGTAATCGGTTAAAAGAGAAAGAAACTTGTGTGGTATGTAATGCCAAATACTGCAGCAATTGTATACTCAGAGCAATGGGGTCAATGCCTGAAGGGCGCAAATGTGTAAGCTGCATTGGCATGCCTATTGATGAATCAAAGCGGTCGAGTTTGGGTAAAAGCTCAAGAGTGTTGAGCCATCTCCTAAGTGCCTTAGAGGTGCAACAAATCATGAAGGCTGAAAGGAATGCCCGGCAAATCAATTGCGACCAGAACATCTCAGTGTGAATGGAAGGCCACTTTGGCCAGAAGAA_-_ATGGCTGTTCTACTTGGTTGTCCTAATCCACCCCGTAAATTAAAGCCTGGGAACTATTGGTATGATAAAGTATCTGGATTTTGGGGCGTGGTAGGCCAGAAGCCAAGTCAGATCATAAGTCCACACTTGAATGTAGGGGCTGATCTTCAAGCTGATGCGAGTGGTGGCAAGACAAAGGTTTTTATTAATGGGCGTGAAATTACTAAAACGGAACTCAAGATGCTGACGATGACAGGTGTGCAGTGTGCAGGTGAATCACACTTTTGGCTTAATGCAGATGGTTCATATCAAGAGGAAGGTCATAATATCATTAGAGGAAATATATGGGGCAAGACATATAAAGAGGAAGGTCACAACATCGTTAAAGGAAATATATGGTGCAAGGCAACAACGCGGCTTTTATGCACTTTACTATCATTGCCTACACCTCGTGGAGATTTTATTGGTGGAGCAGCAGATGCGAATAATCAGTCAAACAGATTGCTTCCTGAATACCTAGAGCCAAAGAAAGTTCAAAAGCTTTTATTGCTTGGATATCAAGGATCTGGTACTAGTACCATTTTTAAGCAGGCAAGAATTATATACAAGGGTGACATACTTTCAGAGGAAGAGCTGCAAAATATTAAGCTGATGATACAAAGCAACCTGTACAAATACCTTAGTATCTTGCTAGAGGCTCGTGAGCGTTTTGAGGAAGAAAGTTTGACAGAAAGAGATCACAATGCACAGGATCGACCTATCTCATCAGGGGAGAGTGAACAAGAAGCTGATGTTCAAAGTGTTTATTCCATCCAACCGAGATTGAAGGCCTTTTCTGACTGGCTTCTGAAAATTGTGGCGATGGGGGATTTTGATAACTTTTTCCCAGCTGCCACACGTGAGTATGCTCCTTTGGTTGAGGAATTATGGAGGGACCCTGCAATTCAGGCGACATATAAAAGAAGAAATGAGCTGCACATGCTTCCCGATGTTGCTGGTTACTTCTTGGGGCAGGTTGCTGCAATAGCCAGTAATGAATATGAGCCTTCTGATGAAGACATTTTATGTGCAGAAGGAGTGACCCAAAGTAATGGGTTAGCTTTTTTTGAATTTTCAATGGATGACAGGAACTCAAATACAGAATTTTACCATGATGGTGTTGATTACCAGTGTCCTCTTGTGAGGTACCAGCTTATCAGGCCGAATGCGAAAGACTTGAATGAAGGCTGCAAATGGCTGGATATGTTTGAGGATGTTCGGGCTGTAATCTTTTGCATTGGTCTCAGTGATTATGACCAGATGTGGGCTGAGAGTAATGGTCACCTCAGAAATAAGATGATCTTGAGCAAAGAGCTATTCGAGAATGTGGTAAAGCACCATTGTTTCAGAAATATGCCAGTTGTGTTATTATTCAACAAATTTGATGTATTTGAGGAAAAAATCAACACAGTTCCTCTTACAACATGCGAGTGGTTCAACGATTTCAATCCTGTCAAGGCACATCATAACAATTCATCGTTGGCTCATCAGGCATACTATTATGTTGCTATGAAATTCAAATTGCTATTCACATCAATTAGCAATCGTAAATTATTTGTAGGGCAAGTCAAAGCTCGAGATAGGGACAGTGTAGAAGAGGCTTTCAAATATATACGGGAGGTCCTGAAGTGGGATGAAGACAGAGAATTTTACAACAATCAGGAGGAGTCCGATTATGACACGAGTTCCTTTTCCCCAAATATAAGGCACGAGGATTGA___ATATTGTTCCTTTTATTTCTGTACTTAATTATGAGACGGGGATGGGATTCGATGATTCATCATGTAACAGTAGCAAGAAGTCCTCCCGGCCAATTATAAGACAGGAGGATTTTTTCCTAGTTGGTCCTAAGAGTTGTAACATGAATTTTTAGAAGGGATGAAGATGTTGAGCATGTTGCCTAAGCTGGATGAAAATGATTTTTGTAATAGATATATCCTTGCACCAAAGTCATTGGTCAATGGTGGCCCAGTATTGGCATTGGTTAT

Fln Alignment:

Contig14502___MILSKELFENVVKHHCFRNMPVVLLFNKFDVFEEKINTVPLTTCEWFNDFNPVKAHHNNSSLAHQAYYYVAMKFKLLFTSIS-----NRKLFVGQVKARDRDSVEEAFKYIREVL
D5AB61_______________MMETKELFDWVLKQPWFEKTSFLLFLNKFDIFETKVLKVPLNVCEWFRDYQPLTS--GKQEIEH-AYEFVKKKFEELYFQNTPADRVDRVFKIYRTTALDQKLIKKTFKLVDETL

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
510		83		16	0.994512
512			83	16	0.994512
624		20		80	0.995493
627			80	20	0.995493
783	25			75	0.996473
786		75		25	0.996473
789	20	80			0.995493
790	20	80			0.995493
793	80			20	0.995493
992			12	87	0.992554
1068	20		80		0.995493
1112		75		25	0.996473
1447	14		85		0.993533
1448	14			85	0.993533
1670	14		85		0.993533
1671	16			83	0.994512
1673			16	83	0.994512
1674		83		16	0.994512
1685	14	85			0.993533
1856	25			75	0.996473
1858		75	25		0.996473
1859	75		25		0.996473
1860		75	25		0.996473
1964	33		66		0.997452
1965	66	33			0.997452
1967			66	33	0.997452
1968	66			33	0.997452
2117		28	71		1.0
2191	75		25		0.996473
2312			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain