SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14460

Length: 1348 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene14460 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[D] COG0206 Cell division GTPase	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Plastid division protein FtsZ	-	-	2.504e-27	-

Source	Gene names
Sma3	At2g36250; At3g52750; At5g55280; AtFtsZ2-1; CHLREDRAFT_132433; CHLREDRAFT_140409; CcftsZ; CmftsZ1; CmftsZ2; CmftsZ2-1; CmftsZ2-2; CpFtsZ-cy; F3C22_150; FTSZ; FTSZ1; FTSZ2; FtsZ; FtsZ1; GSVIVT00021622001; GSVIVT00027244001; GsftsZ1; GsftsZ2; H1005F08.7; LO

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	barrier septum assembly	GO:0000917	Biological Process	-
Sma3	microtubule-based process	GO:0007017	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	chloroplast fission	GO:0010020	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cell division protein FtsZ	IPR000158	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G55280.1	FTSZ1-1, ATFTSZ1-1, CPFTSZ homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 chr5:22420740-22422527 REVERSE LENGTH=433	87%
RefSeq	Arabidopsis thaliana	NP_200339.1	cell division protein ftsZ-like protein [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002300342.1	predicted protein [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSV8

Fln msg: your sequence is shorter than subject: 233 - 439

Fln protein: TVGVVTYPFSFEGRKRAVQALEAIEKLQESVDTLIVIPNDRLLDVATEKTPLQDAFLLADDVLRQGVQGISDIITVPGLVNVDFADVKAIMKNSGTAMLGVGISSGKNRAEEAAQQATSAPLIERSIERATGVVYNITGGKDMTLQEVNRVSQVVTSLADPSANIIFGAVVDERYRGEVHVTIIATGFSQTFQKTLITDPKVAGQEAKVSTELKPKLKPRMTISSSGRKGIL*

Protein Length: 234

Fln nts: GACTGTTGGTGTAGTTACTTACCCTTTCAGTTTTGAGGGTCGCAAAAGAGCTGTACAGGCTTTGGAAGCAATTGAGAAACTGCAAGAAAGTGTGGACACACTGATTGTCATCCCTAATGACAGGTTACTAGATGTTGCGACAGAGAAAACACCTCTGCAAGATGCTTTTCTTCTTGCTGATGATGTACTGCGTCAAGGTGTTCAAGGAATATCTGACATTATCACAGTTCCTGGTTTGGTGAATGTGGACTTTGCAGATGTGAAAGCCATTATGAAGAATTCAGGGACAGCCATGCTTGGGGTGGGAATTTCATCTGGTAAAAACCGTGCAGAGGAAGCAGCTCAACAGGCCACCTCAGCTCCTCTGATAGAAAGATCAATTGAGCGTGCCACTGGGGTTGTGTATAATATAACTGGAGGAAAGGACATGACATTGCAAGAAGTAAACAGAGTCTCACAAGTAGTGACTAGTTTGGCAGACCCATCGGCAAATATTATATTTGGAGCTGTCGTTGATGAAAGGTATAGAGGAGAGGTTCATGTGACTATTATTGCAACAGGATTTTCCCAAACATTTCAAAAGACATTGATAACAGATCCGAAAGTTGCTGGGCAAGAAGCAAAAGTGTCTACAGAACTGAAACCAAAATTGAAACCGAGAATGACTATCTCTTCTTCTGGTAGAAAGGGAATTTTATGA___GGACAGGGAGACAATAATTGGATTTCACTTGTCGCTTCTGTACATAAAGGTGGCAGTTTCACCTTACTGCCATGGCTTCTGGTGCTATGTTTGACGCACAGCTTCTTAGTGAATTGGAGGGGAAAAGGAACTCTTCTCAGATTTGCAAGCTTCATTTTTTAATGATACGCTAAGAGGAGTTTAGATTGATCTCAATTACCTTCTTTAGTAATTGAATACCTTTCATTCTTCATTTTCTTATAGTAAATGTAAAGCTTTCGTTTTACCAGTATCAAGATTCAGTAAAACCTTTGTCTATCGTATTTTCCTAGGCATCTGGATTCTGCTTTTACTATGACTATTATCCAGAGCTCGGAAATGATGTTTGAATCAGGAAGATACTATTTTTCCTGCTATCTACAGAATTGATGTAGTACACAGTTCCATTTTTCTTAATTTGTTTGCGTTGATGTCTTAAAACAAATGTCAAGGACACATAGGTTTCTGGTCAGATACTATTTAGTTGTTAGTTGTCGGAAGTATGGTAAGGAGTTGAAGTGCACATCCATAGACATGCATTTTGTATTTATTTCTAACTGGGGATAGGTTTTTGACTTGGAAATGCATCATTTGAACTATGCAAAGCTGTTTGAAAATGATACTCTGTCA

Fln Alignment:

Contig14460___TVGVVTYPFSFEGRKRAVQALEAIEKLQESVDTLIVIPNDRLLDVATEKTPLQDAFLLADDVLRQGVQGISDIITVPGLVNVDFADVKAIMKNSGTAMLGVGISSGKNRAEEAAQQATSAPLIERSIERATGVVYNITGGKDMTLQEVNRVSQVVTSLADPSANIIFGAVVDERYRGEVHVTIIATGFSQTFQKTLITDPKVAGQEAKVSTELKPKLKPRMTISS--SGRKGIL
C0PSV8_______________TVGVVTYPFSFEGRRRSVQALEAIERLQKCVDTLIVIPNDRLLDVVEEQTPLEEAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMSNSGTAMLGVGVSSGKNRAEEAAQQATSAPLIERSIERATGVVYNITGGKDLTLQEVNKVSQVVTSLADPSANIIFGAVVDDRYAGEIHVTIIATGFSQTFQKALVTDPKVAKQEAQEAKGLESSRKGSAPVSSRPSGRKWLL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
886		25		75	0.996473
901		25	75		0.996473
1009	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain