SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14392

Length: 1234 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14392

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone-lysine N-methyltransferase SUVR3 n=2 Tax=Andropogoneae RepID=B6TYP5_MAIZE	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Histone-lysine N-methyltransferase SUVR3	-	-	3.506e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	7.732e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		7.732e-06	%

Source	Gene names
Sma3	At3g03750; CHLREDRAFT_145254; GSVIVT00003847001; Os01g0772100; OsI_03909; OsJ_03620; PHYPADRAFT_112173; POPTRDRAFT_241918; RCOM_1321690; SDG20; SDG935; SET20; SUVR3; VITISV_012529; VITISV_043758;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Pre-SET zinc-binding sub-group	IPR003606	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Lateral organ boundaries, LOB	IPR004883	-	-
Sma3	AWS	IPR006560	-	-
Sma3	Pre-SET domain	IPR007728	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002319719.1	SET domain protein, partial [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D5AA49

Fln msg: your sequence is longer than subject: 376 - 332

Fln protein: MAKKCKEYENSGLEWADLVLPWLPPRSLASIASACRALRSLSEKITALRIADAARGLEKYPVPVLNSVDDTLYPYFLYSPTSIPAVSSPKQQWGHCPTQSPLEGRPLAVRADFFGSAGCTCVVCSQSRAAALGNHGDENELVRGIVIEEFGDEEGCPCNKLRVYTEDGRISFPDGNSDTQFEGFNVGPPLVMECGPACRCGSSCSNRVSQRGLAVRVAVVRHPRKGWGLHSLESIRKGAFVCEYAGELLTTVEARERQRHYDDSILSKHNFSSALLVIREHLPSGKACMRMNIDATKIGNVARFINHSCDGGNLLPTLVRCSGSILARLCFFVSRDICEGEELTFCYGTVRRNSKMSPCFCDTPVCCGMLPSEAT*

Protein Length: 377

Fln nts: CGTCAAATTTGTCATGGGGAGTCCGTAAACTTATGTAGTGAGATAGATTTGCTTTAATGGTGGACGTTTCCCGCTCGGAGTACGAAAAGAA_-_ATGGCGAAGAAATGCAAGGAGTATGAAAATTCGGGATTGGAATGGGCCGATCTGGTACTCCCATGGCTGCCCCCTCGTTCTCTTGCATCTATCGCTTCAGCTTGCAGGGCTCTCAGATCACTTTCAGAGAAAATTACGGCCCTTAGAATCGCAGACGCAGCGCGGGGATTAGAGAAATACCCCGTTCCAGTTTTGAATTCGGTGGACGATACCCTCTACCCTTATTTCCTCTATTCTCCCACTTCGATTCCCGCGGTTTCTTCCCCAAAACAGCAATGGGGCCACTGCCCCACACAAAGCCCTCTGGAAGGCAGGCCTTTAGCGGTGCGCGCAGACTTTTTCGGATCGGCAGGATGCACTTGTGTGGTTTGCTCTCAATCTCGCGCAGCCGCGCTTGGAAACCACGGGGACGAAAACGAACTGGTCCGCGGTATCGTGATCGAGGAATTTGGCGACGAAGAGGGTTGCCCCTGCAATAAGCTTAGGGTTTATACAGAAGATGGCAGAATTTCTTTCCCGGATGGCAATAGTGACACTCAGTTCGAGGGCTTCAATGTAGGCCCGCCGCTGGTTATGGAGTGCGGGCCAGCGTGCCGTTGCGGTTCGAGCTGCAGTAACCGGGTCTCGCAGCGCGGTTTGGCAGTCAGGGTCGCTGTCGTTAGGCATCCGAGGAAGGGATGGGGTTTGCATTCTTTGGAGTCAATTAGAAAAGGAGCCTTTGTTTGTGAGTATGCAGGTGAACTTTTGACAACAGTTGAAGCTAGAGAAAGGCAACGGCATTATGATGATTCCATTTTGAGCAAGCACAATTTTAGTTCTGCTCTTTTGGTCATAAGAGAGCATTTGCCTTCGGGTAAAGCATGCATGCGGATGAATATTGATGCCACAAAAATTGGTAATGTAGCTAGATTCATTAACCACTCATGTGATGGGGGTAATTTACTACCTACTTTGGTTCGCTGTTCGGGATCAATTCTTGCTAGGCTATGTTTCTTTGTTTCAAGAGATATTTGTGAAGGTGAGGAGTTGACATTTTGCTATGGAACTGTTAGGAGAAACTCAAAAATGTCACCTTGCTTTTGTGACACCCCTGTCTGTTGTGGCATGTTACCATCAGAGGCAACATGA___ATACTTAACTATTGC

Fln Alignment:

Contig14392___EKITALRIADAARGLEKYPVPVLNSVDDTLYPYFLYSPTSIPAVSSPKQQWGHCPTQSPLEGRPLAVRADFFGSAGCTCVVCSQSRAAALGNHGDENELVRGIVIEEFGDEEGCPCNKLRVYTEDGRISFPDGNSDTQFEGFNVGPPLVMECGPACRCGSSCSNRVSQRGLAVRVAVVRHPRKGWGLHSLESIRKGAFVCEYAGELLTTVEARERQRHYDDSILSKHNFSSALLVIREHLPSGKACMRMNIDATKIGNVARFINHSCDGGNLLPTLVRCSGSILARLCFFVSRDICEGEELTFCYGTVRRNSKMSPCFCDTPVCCGMLPSEAT
D5AA49_______________KKITALRIADAARGLEKYPVLVLNSVDDTLYPYFLYTPTSIPAVSSPKQQWGHCPTQNALEAGPLAVDAGFFGSAGCTCIDCSQSPAAGLGNHGEENDLVRSIVIEEFGGEEGCPCNKFRVYTEDGRISFTDGNCDTQFEGLNGGPPLVMECGPACRCGSSCRNRVSQRGLAVRVAVVRHPRKGWSLHSLEPITRGAFVCEYAGELLTTVEARERQRHYDDAIVNKHNSCSALLVIREHLP--------------------------------------SGSILARLFFFASRDICEGEELTFCYGIVRKNSKMSPCFCNTPVCCGMLPSEAT

SNPs (tot: 3)

Position	A %	C %	G %	Probability
407	25		75	0.996473
409	25	75		0.996473
547	85		14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain