SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14372

Length: 988 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14372

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Plasma membrane ATPase n=11 Tax=Magnoliophyta RepID=PMA1_ORYSJ	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Plasma membrane H+-ATPase	-	-	3.25e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Adenosinetriphosphatase.	EC:3.6.1.3	-	2.594e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Purine metabolism	00230		2.594e-07	%
Sma3	Proton-exporting ATPase.	EC:3.6.3.6	-	9.19e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		9.19e-19	%

Source	Gene names
Sma3	AHA1; AHA10; AHA11; AHA2; AHA3; AHA4; AHA5; AHA6; AHA7; AHA8; AHA9; AT4G30190; ATP1; ATPase-3A; ATPase2-3A; Aa_42640; At1g17260; At1g80660; At2g07560; At2g18960; At2g24520; At3g42640; At3g47950; At3g60330; At4g11730; At4g30190; At5g57350; At5g62670; BHA-1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	calcium-transporting ATPase activity	GO:0005388	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-
Sma3	proton transport	GO:0015992	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, plasma-membrane proton-efflux	IPR006534	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G18960.1	AHA1, PMA, OST2, HA1 H(+)-ATPase 1 chr2:8221858-8227268 FORWARD LENGTH=949	74%
RefSeq	Arabidopsis thaliana	NP_179486.1	H(+)-ATPase 1 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002329641.1	autoinhibited H+ ATPase [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg: Overlapping hits, possible frame ERROR between 202 and 166, Unexpected STOP codon at 3' end. Distance to subject end: 35 aas, your sequence is shorter than subject: 236 - 955

Fln protein: WNDWDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIIHAVITSRCxxxxxxxxxxxxxxITIRIVLGFLLITLIWKFDCSAFMALIMAILNDGTIRTISKDRVKPSPLPDSWKLKEIFATGVVLGTYLATMTVIFFWAMYDHQFFTEKFGVRPLRTNNECMAALYLQVSIVSQALIFVTRFRS*SFLKRPALLLVIAFIIAQLTATFIAVYATGICRNQWHRMGYG*

Protein Length: 237

Fln nts: GTGGAATGACTGGGATGGAGTTAACGACGCTCCGGCTTTGAAGAAGGCAGATATCGGAATTGCAGTTGCTGATGCCACGGATGCCGCAAGAAGTGCCTCAGACATTGTACTTACGGAACCAGGGCTTAGTGTCATTATCCATGCTGTCATTACCAGTCGTTGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATCACAATCCGTATTGTGCTTGGCTTCTTGCTGATCACCCTGATATGGAAATTTGATTGCTCTGCTTTTATGGCTCTGATCATGGCTATTCTTAATGATGGCACAATCAGGACAATATCCAAGGACCGTGTTAAACCATCTCCACTGCCTGACAGTTGGAAGTTGAAGGAAATATTTGCAACAGGTGTTGTTTTGGGCACCTACCTCGCTACCATGACAGTCATATTTTTCTGGGCAATGTACGACCATCAATTTTTCACGGAGAAGTTTGGTGTGAGACCCTTAAGAACAAACAATGAATGCATGGCTGCACTGTACTTGCAAGTCAGTATTGTGAGCCAGGCCCTCATCTTTGTGACTCGGTTCCGCAGCTGATCATTTTTAAAGAGGCCTGCCCTTCTACTTGTCATTGCCTTTATAATAGCTCAATTGACTGCTACATTCATTGCAGTGTATGCAACTGGTATTTGCAGGAATCAATGGCATCGGATGGGGTATGGGTAGTATTAGGCTATATCGATTTTGTGTCGCCCCTCATTGCAAAGCAACCACGCAAGCCCGTACTAGTCGCTTTTATGTTGCTGCAGGTCAACAGGCAAGCCTCGGCCCAGGCATTAGAGAAAACCGCCATCGGCTTTTGTGTTGCCGCAGATCAACAGGCAAGCCTCAGCCCACTCTCCTCTTCCTGTCCGAGCCACCAAACAACCCAGTCAGTTTATTTGTTCCCACAGACCGACAGCCATTCCACGTCGAGTAGTTTCGCTATTCCCTATTCCATTCCCAT

Fln Alignment:

Contig14372___DGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIIHAVITSRCIFQxxxxxxxxxxAVSITIRIVLGFLLITLIWKFDCSAFMALIMAILNDGTIRTISKDRVKPSPLPDSWKLKEIFATGVVLGTYLATMTVIFFWAMYDHQFFTEKFGVRPLRTN-NECMAALYLQVSIVSQALIFVTRFRS*SFLKRPALLLVIAFIIAQLTATFIAVYA
B8LQS1_______________DGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQxxxxxxxxxxAVSITIRIVLGFMLIALIWRFDFSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGTYLAVMTVIFFWAMHKTDFFPNKFGVRPIRDSPHELTSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLMTAFIIAQLIATFLAVYA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
279		66		33	0.997452
289			66	33	0.997452
291		33		66	0.997452
315			66	33	0.997452
332		33		66	0.997452
340	50		50		1.0
354		50		50	1.0
406		50		50	1.0
442	50		50		1.0
467	40		60		1.0
508	25		75		0.996473
514		75		25	0.996473
568	33		66		0.997452
569	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain