SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14310

Length: 943 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14310

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lectin protein kinase-like protein [Arabidopsis thaliana] sp\|Q9XID3.1\|Y1343_ARATH RecName: Full=G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300; Flags: Precursor gb\|AAD39605.1\|AC007454_4 Contains similarity to gi\|479356 protein kin	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	S-receptor kinase, putative	-	-	2.341e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.01e-09	-

Source	Gene names
Sma3	17L07.5; ACRE11; AT4g00340; AT4g32300; A_IG005I10.19; At1g34300; At2g19130; At4g32300; At5g20050; B1099D03.46; B1099D03.51; B1423D04.25; DUPR11.18; F10M6.60; F23M19.5; F5I10.19; F8B4.10; GSVIVT00000338001; GSVIVT00001733001; GSVIVT00001735001; GSVIVT00002

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	peptidoglycan-based cell wall	GO:0009274	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3		GO:0007242	Biological Process	-
Sma3	peptidoglycan biosynthetic process	GO:0009252	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	Glycosyl transferase, family 51	IPR001264	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3		IPR001899	-	-
Sma3	PAN-1 domain	IPR003014	-	-
Sma3	Long hematopoietin receptor, Gp130 family 2, conserved site	IPR003529	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G34300.1	lectin protein kinase family protein chr1:12503450-12505939 FORWARD LENGTH=829	63%
RefSeq	Arabidopsis thaliana	NP_174690.1	lectin protein kinase-like protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002327224.1	predicted protein, partial [Populus trichocarpa]	74%

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
283	33		66		0.997452
284		33		66	1.0
308	66		33		0.997452
310			33	66	0.997452
321		66		33	0.997452
331	25		75		0.996473
359		25	75		0.996473
371		75	25		0.996473
391		25		75	0.996473
530	33	66			0.997452
534	33		66		0.997452
536	33			33	0.997753
580			33	66	0.997452
592	33			66	0.997452
602	33	66			1.0
614	88			11	0.923564
616		77	22		0.999999
625		77	22		0.999999
635			22	77	0.999999
651		77		22	0.999999
667	77		22		0.999999
669		66		33	1.0
673			75	25	1.0
725	12		87		0.992554
734			75	25	1.0
738	25			75	1.0
749		14		85	0.993533
752			85	14	0.993533
760			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain