SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14194

Length: 4263 nt

UniGene Fasta

>sp_v3.0_unigene14194
CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTGTCACTCATTTTTCTTCCTCTGGCCTTCCGGGCTGGGGGAGAAACGCCCTCACAGTATCTCTTCCGTAGTCTTTTCTGCCCATCCGAGGCTTGCTCGGTTTCCTGGTATATTTTTCTCGTCTCGGCTCTCTGGTTCTTGACGCGCTCGCGGCTTCTCCATTCAGGAAACAATGCATTCTAGTGCAGTCTCTCTGGCCTTCTTCAGAAGAATGTTCCCCACTTGGTATATGATTGCTACAGAAGCGGTTGGTATGTCCGGCGGTCTGGCAGTATTGTGGAACCCGGTCTTGGTCAGAGCAAAGGCTTTCAAATGCTGTGCTGGGATCCTCCTCTCGGCTACTATCAGAGGAAGGTCTCAGATCATCAATATCTTGAATATATACGCGCCCTATAGGGAAAGAGCTTTGTTCTGGGACAAGCTATTTGATTCTGAAATTCTCGATATAAAATCCTTTTTAATAGCAGGCGACCTTAATATGACTCTCAACTCTGCGGAATGCTGGGGCTGTTGTAGAAAGCAGGACCGCATGGCGGAAAAAATGCGTCGGGAGCTTCTAAATAGAAATTTAGTTGATATTATTCCAGAAAAATTGGTCCCAACGTGGGAAAATGGCAGGACGAGCTCAGCATATATTGCAAAGAGAATAGATCGCTTTATTATAAATGCTAGCCTAATTGAAAGCTGGGGCATGCCAGTCGCCAGAACGGGACTGGAGCCCTCCTCGGATCACAAACCCATCTTCCTGGAATGGGTGAATATGAACTGCAAATTCGGCTACCCGTTCAAATTTAATAGATCCCATCTCGAGGATAGATCTTTCAATGAGTTCATGGCTAACACTTGGCGGGACATTCACCAGTCTGAAGAGGCTCTCTTATATACATTCCGGGAAAAAATCCAATTGCTGAGAAAAGCTGCAAAGGATTGGCAGATAAAGAAGAGGAAGCTGAACAAGCGGGAGTTGTCTGACATCAAAAAAGAATTATGTTCTCTCTGATTTGGTCCAATATAATGGACTATCTTTTGATCAAAAAATTCGCATCAGAACCCTCGAAAAAAAGAAACAAGAGTTGCTTCAAAAGGAGGAAGCTTTATGGAGACTTAAGAGCAGAGCGACATGGCTCAAGGAGGGTGATCGAAATACAAAGTTTTTTCACAACTTCGCAAATGCTCGTCGGGTCAAGAATTCTATTTAGAAGATTAAGGATGGCGAGGGGGGTTATTTCCTTACCCAACAGGAGATCTCGGCAGAAGCCACAAGATTTTTTCAAAATCAGTATAAAAGGCAGGATAGCGATGCACGTGACTCTGTATGGGTTGTGGAACATATGCCTGTAATGTTCGATGAAAGCGCAAATGATCTATTCCTTAAGCCAATTACGGAAGAGGAACTTCTCGATACCATTAAAATGTTCAAAAGGGACAAAAGTCCGAGCCCTGATGGTTGGCCGATCGAGTTCTTCTGTCATTTTTATGATATGTTCAAAGGGGGTCTGTTGAGCATGGTGAATGCATCCCGCTTGTCTGGGCACATTAACAATGCGCTTTCCGCCACCTTTATTGCTCTTATACCAAAGAAGGACAAATCGGAATCTTTCTCCGATTTCAGGCCGATAGCCCTATGCAATACCCTATATAAAATTATATCAAAGATTATTGCGGAAAGGCTGAAGGTTGTTTTAAACTCTTTCATAACAAAGGAACAGCATGCTTTTTTAAAAGATAGACTCATTATGGACGCTGTCGCTATGGCGCAAGAATGCCTCTTTACAATCTCATCAAACAACATTGATGTTGCAGTCCTGAAGATTGACCTCAAAAAAGCCTACGATTGCGTAGACTGGGGCTTCCTTAGAATCCTTCTTGCGAAAATTGGATTAAGAGTTCAGAGTATAAAATGGATTATGGCATGTGTTGAAAGCGTCAATTACTCAGTTCTCATTAATGGCATCCCATCTTCCTTCTTTCCAGCAAAAAGGGGCCTCCGCCAAGGATGCCCTCTTTCTCCTCTTCTTTTTATTCTCGTGATGAACTCACTCAGCTCACAGATTAATCTGGCCGTTCAGGAAGGGAGGTGCAGGCCGATCAAGATCTGCAAGGACATTTCTCTCTCTCATAATCTTTTTGTAGATGATATTCTCCTCTTTGCAATGTTATGTGAATCATCATGGATCTGCCTTAAGGAGATTTTCTAGAAATTTCAATCTGCATCGGGCCTTTCTATCAACAAAGATAAGTCCACGTTGTATCACAATGATTCAAATCCGGTCTTAGCTCAATGGATTGCTGATCTTTTTGGCATAAAACTCGCTCTGATAAATGATGGGTTTAAATACCTTGGATTTCATCTAAAAGCAAAAGCTTATTGCGCTCGGGATTGGCAGTGGTTGATCGAGCGCTTTTATAAAAAAATCTCATGCTGGGAGATGCGTTTTTTATCTTTGGCGGGTAGATATATTTTGGTCCAAACCGTTCTTTCACAACTGGCGGTCTATTGGAGTCATCTCTTCTTTCTTCCTGCATCCATTTCAAGTAAAATGGCTTCTTTGGCAGCCACCTTTTTATGGGGCGGTAGATCTCATCAATTCAAGATCCATCTGATAAAGTGGGATTCCATTTCAAGGCCAAAGAAATTAGGCGGATGGGGCCTTCTGCACATGCCTACCTTCGGCAGGGCACTTCTGTGCAAATCCCTTCTTAGAGGCATTTATGGGAATTGTCAATGGAGCACTATCATTAATCAAAGATACCTCAAAGGCAAAAGCATGGTTTTTTGGTTCAGAAGACGCTCTCTAGGCATCAGAAGGGGCTCCCCCATATGGCAAAGTTTCAGAAGATACAGTCTCTATTCTTCATGAATTTAAGATGGAATTTTGGCACGGGATCTAGTATTTTTATCGGCATCGATTCAACTGTGCTCTGTTTGGAATCGATGATCCCCTCTGCTCTGATATCTTTCTTTTCCTCGAGAGGCATATTCACATGGAACAAATTAATAAAATCGTGGTTATCTCAATCCCCCGTATGGAAGGATGCGGCTGAATTATCTATGCCTCCATCTCTTTGCCCTTTATGGTCAGCGGCTATCTACAGGTTTTCCAGCAAAGGCTTCACTCAATCAGGAACAAAGGATGAACTTATCTGGTCTCTTCAGAAATCATCACAGCCCATCGGCGTCAGAGATATTTATGCAGCAGCTCTATCTCGCCTGCCAGCCTCCTCCCCTATCTTTCCACTCAAATTATGGAAAGTCTCATGTCCACTCAAGATGGTCCTCTTCTCATGGCTCCTCTTCTCGGACAGGAACCTCACCTGGGAGGTTCTTCAAAGAAAGGGTTGGCAAGGTCCGGGTAGATGCCAAATGTGCCGTTCGGAAACTGAATCCAACTCGCATATGTTCTTCATCTGCGCCTCGTCTTCAATAATCTGGTATGAATTATCTTTGATTTATGGCTTTCCTCATCAAGTTTTTTCATCTGTACAGGATGCTTTCAATTGGTGGAGCGCGAAGAATCTTTCCGGGCATTCACTGTTTATCCTCACCTGTTGGTTCTTATGGAAATGGCGAAATGCTTGCATTTTCCAGAATTCCAGGATGCCCCTTGATTCTATCCTGATCACAATCACGGGCCATCTGCCCCCCTCAGATTAACTCGGTTACAGATCCATGTCTATTCTCATCATCGTGAACCGGCCTGTCACTCAATGTGGGTGTTCTTTCAGATTTTGGTCTTGGACCGGCCTCACTCAATGTGGGTGTTCTTTCAGATTTTGGTTTGCTGTTCAGATCCTAAATGCAAATATCTATCAATGGTGGTCCCGCTTCTCTCCCATGAAGCGTTATATGTTGGAGGTTTTTCTGTTTTCTCTCTCATAATCTTTTTTGGGATTGGTTTGCTTCTTTCTTGAAGCGCCACTGTTGATATGATGTTGGTTCCTCATGCTTTTATGTTCACTGCATTTCTGCTCAGGGTGGCTGGCTCTTTAGGCTGGCTTTCTCATGACAGTTACAATAGATTTTCATGCTGTCTCATCAGACTCTCAATCTGGCTATCTGATCAGCTGTAGTTTTTTCCAGCTGTTTCTCTCAGATCATGATCATGTATACAGATCTTTATATTTCCTTAATATAATCTATTTATGGTTTTTCTCTCTGAAAAAAAAGGTGTGATCCGATAGTTTGAAATCATAAGATGAAAGAATCGCCGGCCGTTATCCACTA

Ace file of the UniGene sp_v3.0_unigene14194

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative non-LTR retroelement reverse transcriptase n=1 Tax=Arabidopsis thaliana RepID=O22148_ARATH	-	-	0.0	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA94

Fln msg: your sequence is longer than subject: 278 - 161

Fln protein: MAKFQKIQSLFFMNLRWNFGTGSSIFIGIDSTVLCLESMIPSALISFFSSRGIFTWNKLIKSWLSQSPVWKDAAELSMPPSLCPLWSAAIYRFSSKGFTQSGTKDELIWSLQKSSQPIGVRDIYAAALSRLPASSPIFPLKLWKVSCPLKMVLFSWLLFSDRNLTWEVLQRKGWQGPGRCQMCRSETESNSHMFFICASSSIIWYELSLIYGFPHQVFSSVQDAFNWWSAKNLSGHSLFILTCWFLWKWRNACIFQNSRMPLDSILITITGHLPPSD*

Protein Length: 279

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTGTCACTCATTTTTCTTCCTCTGGCCTTCCGGGCTGGGGGAGAAACGCCCTCACAGTATCTCTTCCGTAGTCTTTTCTGCCCATCCGAGGCTTGCTCGGTTTCCTGGTATATTTTTCTCGTCTCGGCTCTCTGGTTCTTGACGCGCTCGCGGCTTCTCCATTCAGGAAACAATGCATTCTAGTGCAGTCTCTCTGGCCTTCTTCAGAAGAATGTTCCCCACTTGGTATATGATTGCTACAGAAGCGGTTGGTATGTCCGGCGGTCTGGCAGTATTGTGGAACCCGGTCTTGGTCAGAGCAAAGGCTTTCAAATGCTGTGCTGGGATCCTCCTCTCGGCTACTATCAGAGGAAGGTCTCAGATCATCAATATCTTGAATATATACGCGCCCTATAGGGAAAGAGCTTTGTTCTGGGACAAGCTATTTGATTCTGAAATTCTCGATATAAAATCCTTTTTAATAGCAGGCGACCTTAATATGACTCTCAACTCTGCGGAATGCTGGGGCTGTTGTAGAAAGCAGGACCGCATGGCGGAAAAAATGCGTCGGGAGCTTCTAAATAGAAATTTAGTTGATATTATTCCAGAAAAATTGGTCCCAACGTGGGAAAATGGCAGGACGAGCTCAGCATATATTGCAAAGAGAATAGATCGCTTTATTATAAATGCTAGCCTAATTGAAAGCTGGGGCATGCCAGTCGCCAGAACGGGACTGGAGCCCTCCTCGGATCACAAACCCATCTTCCTGGAATGGGTGAATATGAACTGCAAATTCGGCTACCCGTTCAAATTTAATAGATCCCATCTCGAGGATAGATCTTTCAATGAGTTCATGGCTAACACTTGGCGGGACATTCACCAGTCTGAAGAGGCTCTCTTATATACATTCCGGGAAAAAATCCAATTGCTGAGAAAAGCTGCAAAGGATTGGCAGATAAAGAAGAGGAAGCTGAACAAGCGGGAGTTGTCTGACATCAAAAAAGAATTATGTTCTCTCTGATTTGGTCCAATATAATGGACTATCTTTTGATCAAAAAATTCGCATCAGAACCCTCGAAAAAAAGAAACAAGAGTTGCTTCAAAAGGAGGAAGCTTTATGGAGACTTAAGAGCAGAGCGACATGGCTCAAGGAGGGTGATCGAAATACAAAGTTTTTTCACAACTTCGCAAATGCTCGTCGGGTCAAGAATTCTATTTAGAAGATTAAGGATGGCGAGGGGGGTTATTTCCTTACCCAACAGGAGATCTCGGCAGAAGCCACAAGATTTTTTCAAAATCAGTATAAAAGGCAGGATAGCGATGCACGTGACTCTGTATGGGTTGTGGAACATATGCCTGTAATGTTCGATGAAAGCGCAAATGATCTATTCCTTAAGCCAATTACGGAAGAGGAACTTCTCGATACCATTAAAATGTTCAAAAGGGACAAAAGTCCGAGCCCTGATGGTTGGCCGATCGAGTTCTTCTGTCATTTTTATGATATGTTCAAAGGGGGTCTGTTGAGCATGGTGAATGCATCCCGCTTGTCTGGGCACATTAACAATGCGCTTTCCGCCACCTTTATTGCTCTTATACCAAAGAAGGACAAATCGGAATCTTTCTCCGATTTCAGGCCGATAGCCCTATGCAATACCCTATATAAAATTATATCAAAGATTATTGCGGAAAGGCTGAAGGTTGTTTTAAACTCTTTCATAACAAAGGAACAGCATGCTTTTTTAAAAGATAGACTCATTATGGACGCTGTCGCTATGGCGCAAGAATGCCTCTTTACAATCTCATCAAACAACATTGATGTTGCAGTCCTGAAGATTGACCTCAAAAAAGCCTACGATTGCGTAGACTGGGGCTTCCTTAGAATCCTTCTTGCGAAAATTGGATTAAGAGTTCAGAGTATAAAATGGATTATGGCATGTGTTGAAAGCGTCAATTACTCAGTTCTCATTAATGGCATCCCATCTTCCTTCTTTCCAGCAAAAAGGGGCCTCCGCCAAGGATGCCCTCTTTCTCCTCTTCTTTTTATTCTCGTGATGAACTCACTCAGCTCACAGATTAATCTGGCCGTTCAGGAAGGGAGGTGCAGGCCGATCAAGATCTGCAAGGACATTTCTCTCTCTCATAATCTTTTTGTAGATGATATTCTCCTCTTTGCAATGTTATGTGAATCATCATGGATCTGCCTTAAGGAGATTTTCTAGAAATTTCAATCTGCATCGGGCCTTTCTATCAACAAAGATAAGTCCACGTTGTATCACAATGATTCAAATCCGGTCTTAGCTCAATGGATTGCTGATCTTTTTGGCATAAAACTCGCTCTGATAAATGATGGGTTTAAATACCTTGGATTTCATCTAAAAGCAAAAGCTTATTGCGCTCGGGATTGGCAGTGGTTGATCGAGCGCTTTTATAAAAAAATCTCATGCTGGGAGATGCGTTTTTTATCTTTGGCGGGTAGATATATTTTGGTCCAAACCGTTCTTTCACAACTGGCGGTCTATTGGAGTCATCTCTTCTTTCTTCCTGCATCCATTTCAAGTAAAATGGCTTCTTTGGCAGCCACCTTTTTATGGGGCGGTAGATCTCATCAATTCAAGATCCATCTGATAAAGTGGGATTCCATTTCAAGGCCAAAGAAATTAGGCGGATGGGGCCTTCTGCACATGCCTACCTTCGGCAGGGCACTTCTGTGCAAATCCCTTCTTAGAGGCATTTATGGGAATTGTCAATGGAGCACTATCATTAATCAAAGATACCTCAAAGGCAAAAGCATGGTTTTTTGGTTCAGAAGACGCTCTCTAGGCATCAGAAGGGGCTCCCCCAT_-_ATGGCAAAGTTTCAGAAGATACAGTCTCTATTCTTCATGAATTTAAGATGGAATTTTGGCACGGGATCTAGTATTTTTATCGGCATCGATTCAACTGTGCTCTGTTTGGAATCGATGATCCCCTCTGCTCTGATATCTTTCTTTTCCTCGAGAGGCATATTCACATGGAACAAATTAATAAAATCGTGGTTATCTCAATCCCCCGTATGGAAGGATGCGGCTGAATTATCTATGCCTCCATCTCTTTGCCCTTTATGGTCAGCGGCTATCTACAGGTTTTCCAGCAAAGGCTTCACTCAATCAGGAACAAAGGATGAACTTATCTGGTCTCTTCAGAAATCATCACAGCCCATCGGCGTCAGAGATATTTATGCAGCAGCTCTATCTCGCCTGCCAGCCTCCTCCCCTATCTTTCCACTCAAATTATGGAAAGTCTCATGTCCACTCAAGATGGTCCTCTTCTCATGGCTCCTCTTCTCGGACAGGAACCTCACCTGGGAGGTTCTTCAAAGAAAGGGTTGGCAAGGTCCGGGTAGATGCCAAATGTGCCGTTCGGAAACTGAATCCAACTCGCATATGTTCTTCATCTGCGCCTCGTCTTCAATAATCTGGTATGAATTATCTTTGATTTATGGCTTTCCTCATCAAGTTTTTTCATCTGTACAGGATGCTTTCAATTGGTGGAGCGCGAAGAATCTTTCCGGGCATTCACTGTTTATCCTCACCTGTTGGTTCTTATGGAAATGGCGAAATGCTTGCATTTTCCAGAATTCCAGGATGCCCCTTGATTCTATCCTGATCACAATCACGGGCCATCTGCCCCCCTCAGATTAA___CTCGGTTACAGATCCATGTCTATTCTCATCATCGTGAACCGGCCTGTCACTCAATGTGGGTGTTCTTTCAGATTTTGGTCTTGGACCGGCCTCACTCAATGTGGGTGTTCTTTCAGATTTTGGTTTGCTGTTCAGATCCTAAATGCAAATATCTATCAATGGTGGTCCCGCTTCTCTCCCATGAAGCGTTATATGTTGGAGGTTTTTCTGTTTTCTCTCTCATAATCTTTTTTGGGATTGGTTTGCTTCTTTCTTGAAGCGCCACTGTTGATATGATGTTGGTTCCTCATGCTTTTATGTTCACTGCATTTCTGCTCAGGGTGGCTGGCTCTTTAGGCTGGCTTTCTCATGACAGTTACAATAGATTTTCATGCTGTCTCATCAGACTCTCAATCTGGCTATCTGATCAGCTGTAGTTTTTTCCAGCTGTTTCTCTCAGATCATGATCATGTATACAGATCTTTATATTTCCTTAATATAATCTATTTATGGTTTTTCTCTCTGAAAAAAAAGGTGTGATCCGATAGTTTGAAATCATAAGATGAAAGAATCGCCGGCCGTTATCCACTA

Fln Alignment:

Contig14194___KLWKVSCPLKMVLFSWLLFSDRNLTWEVLQRKGWQGPGRCQMCRSETESNSHMFFICASSSIIWY-ELSLIYGFPHQVFSSVQDAFNWWS
D5AA94_______________KLWHWPLPMKLKLFIWLAANDKIHTWDILLCRGWIGPNMCFLCRCNSETVYHLFWDCPTPKTIWHIILTTLNSNLLWMGTNLQDCMENWS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
248	16		66		0.988813
274	50		50		1.0
301	33		66		0.997452
305	33		66		0.997452
3986	60		40		1.0
4003			90	10	0.90298
4005	90		10		0.90298
4006		10		90	0.90298
4033			62	37	1.0
4057	62		37		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain