SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14173

Length: 714 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14173

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NO APICAL MERISTEM2 n=2 Tax=Pisum sativum RepID=B8XS03_PEA	-	-	80%
FL-Next	tr=Cup-shaped cotyledon; Picea abies (Norway spruce) (Picea excelsa).	-	-	81%
Sma3	NAC domain protein, IPR003441	-	-	-

Source	Gene names
Sma3	AT4g10350; At1g12260; At1g33280; At1g56010; At1g65910; At1g76420; At2g24430; At3g04060; At3g10500; At3g15170; At3g29035; At4g10350; At5g04410; At5g07680; At5g18270; At5g39610; At5g53950; At5g61430; B1109A06.36; B1153E06.1; B1267B06.11; CUC1; CUC2; CUC3; E

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	meristem initiation	GO:0010014	Biological Process	-
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	-
Sma3	formation of organ boundary	GO:0010160	Biological Process	-
Sma3	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	-
Sma3	secondary shoot formation	GO:0010223	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	gynoecium development	GO:0048467	Biological Process	-
Sma3	regulation of timing of organ formation	GO:0048504	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	negative regulation of cell division	GO:0051782	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	Ribosomal protein L24e-related	IPR000988	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3		IPR015706	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G53950.1	CUC2, ANAC098, ATCUC2 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein chr5:21901966-21903795 REVERSE LENGTH=375	78%
RefSeq	Arabidopsis thaliana	NP_200206.1	protein CUP-SHAPED COTYLEDON 2 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002316880.1	NAC domain protein, IPR003441, partial [Populus trichocarpa]	82%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
464		66	33		0.997452
466	33			66	0.997452
467		33	66		0.997452
469	66	33			0.997452
470	33			66	0.997452
544			14	85	0.993533
624			16	16	0.988813
625	16			83	0.994512
639	25			75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
110	123	AGC AGC AGC AGC AG	14

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain