SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14163

Length: 2731 nt

UniGene Fasta

>sp_v3.0_unigene14163
CGTCGTGACCTTGGCTGTCAGTGTGTTAGTTAACACACAGGCTGTGTGGGAGAGCTTATGATCCTGTGAACTCACTGAGAATAGATGTTGATGTTAGAATGTGCCAAATGCGCCATGTTGTTTGATCTTTGGCCATAGAAACTGGGTGTTAGGTAACACACAGACTGTGTGGGAGAGCTTATGATCCTGTGAACTCACTGAGAACAGCATTGCATTCGACTGTGGAAATCTATTATTGTTTCTGTTGATTTCCATATTGAGAACATTTTAAACTGTTTTATAGTTCTCATCTGGGGGCGTGGCTCGGAATTCAGAAGCTTTTTTTGAAACGGGCTGTTCCTAACTATACCTATGTGTTTTTGGGTCTTGGAAATCCGCATTAAAATTTAAACTCTTCCTGAGGATTTCCAAGGTTCACAGTTACGAACACTAAGAATTATGGAGCGTTGCATTAATCGATGCCTTTTACAGAGCCAATCTATAGTCTCTGGGTCGTATGGAGTTTTCCAGCCAATTACGAAGGCCAGAGTTTACTCATGTACTCTCCCGTCAGATGTTCCCGACCCCAGTTTAAAGCAAAATCAGTTGAGATTTTGTTCTGCATCGACTGCGCCTTTCAGACACAAACATTTGCACAAAAAATCAAATGGTGGCACCTGCGCTACCGCTGGTCAAGTCGCTAGATGTACTCCAGAGGCCCAACAAATTGTTGAAGCTGAAAATTCATGTTGCGAATTTGTTCCTTCGAATTGCAGCGATGAGATTGAGCTAGAAATTATGAAATCCTTGGAAGGCACAGAGGAAGTTTTAAAAGTATCATCGAGCAAACAGTTTAGAGATGAACGAAAAGGTCCGAGTAAGATGGATTCTGGACCTTCAGTTGATACAAGCCAAAATGGCGTGGAGAGGCAGATTAGCACGGAGATATACCCTTCCAGATCTGCAAACGGTCTGCAACCAATGGAGTCTCGAAGAGAAGAATCAATCGAGAACAATGCAGATCTCGAGAAATTATCAAATGAATCTCTCTTGGAAGAGATGACTGTGGAGGAACAACCTACTACTAGTAGGCTTGGTTCTACGAGAGAGGATGGGGAACTTCAATCTAAGGGTATTTGGCAGCAGATGAAAGATATTGTAGGGTTTGCAGGACCAGCGCTTGGGATTTGGTTATCTCCACATATCATGAGTCTCATTAACACAGCCGTTATAGGCAATTGCAGCTCTTTGGAACTTGCTGCTCTTGGACCAGGCACAGTTCTGTGTGATCAGCTAAGTTACATCTTCAATTTTCTATCCATTGCAACTGCAAGCTTAATTGCAACATCTCTTGCAAAGAAGAACAGAGCTGAAGCAGAGAATCATCTATCTCGATTGCTTTTAGTCGCGATGGCTTGTGGACTTGGCATGTTCACCATGATAGAACTTTGTGGGACTTCAATACTAAAAGCCTTTGTTGGGGCAAATAACTCTTCTTTGGTACCTGCAGCGAAAACCTATGTTGAGATTCGAGGTTATGCATGGCCAGCCGTACTAATTACTATGGTTGCTCAAAGTGCCAGCTTGGGTATGCAAGATTCATGGAGCCCGTTAAAAGTTCTGGGAATACAAAGTCTTATAAACTTGGTAACAACTATCCTACTATGTGCATATTTTCGGCTTGGGATTGCAGGAGCAGCATTTGCAACAGCAACTTCTCAGATTATTGGAGCATTTTTGATGCTGAGATCTCTTCATCACAAAGGATACAATCCCTTGGCGATAGTAATTCCTTCTGTGGAGGAACTGCTGCAAATTATTCATATTGCTGGTCCTGTACTGCTAACACTGATGTCTAAGGTGGCGTTTTACACAGTTATTACATACATGGCTACATCATTGGGAGCAATTACACTTGGAGCGCACCAGGTCATGATTGGAGTCTATTCTATGTGCACTGTTTCTGGAGAACCTTTGGCACAAACAGCTCAGTCATTCATGCCAGACTTGATTTCTGGAGTTAACTGCAATATAAAAAAGGCACAGCAGTTGCTTCGCTCACTACTCCTCATTGGAACAATATTTGGCTTTTCATTAGGATGTATCGCCAGCACAATGCCTTGGTTCTTCCCCCAAGTGTTTACAAGAGATGCAGCCATTATTAATCAAATGCGGGGAGTAACATTGCCCTTTTTTCTTAGTATGTTGATCACACCACCCACGCTAAGCCTAGAGGGAACATTATTGGCGGCAAGAGATTTGAAATACCTTAGCTTCAGCATGGTATCATGCTTTTGTGGAGGCTGCATTTCACTTGTGCTCTTGAAAAACATTGGTTTTGGTCTCGTGGGAAGTTGGTGGATACTGGTTGCTTTTCAATGGGCTCGTTTTACTCTTGCATTCTCCAGGCTAGCATATCCGAAAAGTGTTCTGAGGATTGAAGAGTCTATATTGCATTTAAAAGCCGCTTAGGCCAGATTAACTTCAGAAATTCTAGGTCTTATTGAAAGTGTTTTGTCCTTCTTAATTTGTCAGGATACAAGATAAATAATATTAATTACTAAATTTTTTGGGTTGCCGGGGGGTTATTTTTATCATTTGCTATTTATTGAAACTTGAATCACACGTAATATGTATTTCTTCTGAAGTATTACGTGTGGCACTGCACGTCTTATTTTGTAATTTAAGTTTTTGGATTACAGCAGTGTACTAAAATTTTATCCCCAAGTATATGAAAATTGGTATTGCTACC

Ace file of the UniGene sp_v3.0_unigene14163

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MATE efflux family protein [Arabidopsis thaliana] sp\|Q8W4G3.1\|MATE4_ARATH RecName: Full=MATE efflux family protein 4, chloroplastic; AltName: Full=Protein DTX46; Flags: Precursor gb\|AAL32655.1\| Unknown protein [Arabidopsis thaliana] gb\|AAM91197.1\| unknown	-	-	0.0	53%
FL-Next	sp=MATE efflux family protein 4, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Sma3	DNA-damage-inducible protein f, putative	-	-	2.057e-11	-

Source	Gene names
Sma3	At2g21340; At2g21340/F3K23.10; At4g39030; EDS5; F19H22.130; GSVIVT00035944001; GSVIVT00035945001; Os02g0122200; OsI_05644; OsJ_05176; PHYPADRAFT_123916; PHYPADRAFT_126133; PHYPADRAFT_167353; PHYPADRAFT_190193; POPTRDRAFT_721896; POPTRDRAFT_821147; RCOM_14

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	salicylic acid biosynthetic process	GO:0009697	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G21340.1	MATE efflux family protein chr2:9132629-9136236 FORWARD LENGTH=559	53%
RefSeq	Arabidopsis thaliana	NP_565509.4	MATE efflux family protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002313018.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8W4G3

Fln msg: your sequence is longer than subject: 671 - 559

Fln protein: MERCINRCLLQSQSIVSGSYGVFQPITKARVYSCTLPSDVPDPSLKQNQLRFCSASTAPFRHKHLHKKSNGGTCATAGQVARCTPEAQQIVEAENSCCEFVPSNCSDEIELEIMKSLEGTEEVLKVSSSKQFRDERKGPSKMDSGPSVDTSQNGVERQISTEIYPSRSANGLQPMESRREESIENNADLEKLSNESLLEEMTVEEQPTTSRLGSTREDGELQSKGIWQQMKDIVGFAGPALGIWLSPHIMSLINTAVIGNCSSLELAALGPGTVLCDQLSYIFNFLSIATASLIATSLAKKNRAEAENHLSRLLLVAMACGLGMFTMIELCGTSILKAFVGANNSSLVPAAKTYVEIRGYAWPAVLITMVAQSASLGMQDSWSPLKVLGIQSLINLVTTILLCAYFRLGIAGAAFATATSQIIGAFLMLRSLHHKGYNPLAIVIPSVEELLQIIHIAGPVLLTLMSKVAFYTVITYMATSLGAITLGAHQVMIGVYSMCTVSGEPLAQTAQSFMPDLISGVNCNIKKAQQLLRSLLLIGTIFGFSLGCIASTMPWFFPQVFTRDAAIINQMRGVTLPFFLSMLITPPTLSLEGTLLAARDLKYLSFSMVSCFCGGCISLVLLKNIGFGLVGSWWILVAFQWARFTLAFSRLAYPKSVLRIEESILHLKAA*

Protein Length: 672

Fln nts: CGTCGTGACCTTGGCTGTCAGTGTGTTAGTTAACACACAGGCTGTGTGGGAGAGCTTATGATCCTGTGAACTCACTGAGAATAGATGTTGATGTTAGAATGTGCCAAATGCGCCATGTTGTTTGATCTTTGGCCATAGAAACTGGGTGTTAGGTAACACACAGACTGTGTGGGAGAGCTTATGATCCTGTGAACTCACTGAGAACAGCATTGCATTCGACTGTGGAAATCTATTATTGTTTCTGTTGATTTCCATATTGAGAACATTTTAAACTGTTTTATAGTTCTCATCTGGGGGCGTGGCTCGGAATTCAGAAGCTTTTTTTGAAACGGGCTGTTCCTAACTATACCTATGTGTTTTTGGGTCTTGGAAATCCGCATTAAAATTTAAACTCTTCCTGAGGATTTCCAAGGTTCACAGTTACGAACACTAAGAATT_-_ATGGAGCGTTGCATTAATCGATGCCTTTTACAGAGCCAATCTATAGTCTCTGGGTCGTATGGAGTTTTCCAGCCAATTACGAAGGCCAGAGTTTACTCATGTACTCTCCCGTCAGATGTTCCCGACCCCAGTTTAAAGCAAAATCAGTTGAGATTTTGTTCTGCATCGACTGCGCCTTTCAGACACAAACATTTGCACAAAAAATCAAATGGTGGCACCTGCGCTACCGCTGGTCAAGTCGCTAGATGTACTCCAGAGGCCCAACAAATTGTTGAAGCTGAAAATTCATGTTGCGAATTTGTTCCTTCGAATTGCAGCGATGAGATTGAGCTAGAAATTATGAAATCCTTGGAAGGCACAGAGGAAGTTTTAAAAGTATCATCGAGCAAACAGTTTAGAGATGAACGAAAAGGTCCGAGTAAGATGGATTCTGGACCTTCAGTTGATACAAGCCAAAATGGCGTGGAGAGGCAGATTAGCACGGAGATATACCCTTCCAGATCTGCAAACGGTCTGCAACCAATGGAGTCTCGAAGAGAAGAATCAATCGAGAACAATGCAGATCTCGAGAAATTATCAAATGAATCTCTCTTGGAAGAGATGACTGTGGAGGAACAACCTACTACTAGTAGGCTTGGTTCTACGAGAGAGGATGGGGAACTTCAATCTAAGGGTATTTGGCAGCAGATGAAAGATATTGTAGGGTTTGCAGGACCAGCGCTTGGGATTTGGTTATCTCCACATATCATGAGTCTCATTAACACAGCCGTTATAGGCAATTGCAGCTCTTTGGAACTTGCTGCTCTTGGACCAGGCACAGTTCTGTGTGATCAGCTAAGTTACATCTTCAATTTTCTATCCATTGCAACTGCAAGCTTAATTGCAACATCTCTTGCAAAGAAGAACAGAGCTGAAGCAGAGAATCATCTATCTCGATTGCTTTTAGTCGCGATGGCTTGTGGACTTGGCATGTTCACCATGATAGAACTTTGTGGGACTTCAATACTAAAAGCCTTTGTTGGGGCAAATAACTCTTCTTTGGTACCTGCAGCGAAAACCTATGTTGAGATTCGAGGTTATGCATGGCCAGCCGTACTAATTACTATGGTTGCTCAAAGTGCCAGCTTGGGTATGCAAGATTCATGGAGCCCGTTAAAAGTTCTGGGAATACAAAGTCTTATAAACTTGGTAACAACTATCCTACTATGTGCATATTTTCGGCTTGGGATTGCAGGAGCAGCATTTGCAACAGCAACTTCTCAGATTATTGGAGCATTTTTGATGCTGAGATCTCTTCATCACAAAGGATACAATCCCTTGGCGATAGTAATTCCTTCTGTGGAGGAACTGCTGCAAATTATTCATATTGCTGGTCCTGTACTGCTAACACTGATGTCTAAGGTGGCGTTTTACACAGTTATTACATACATGGCTACATCATTGGGAGCAATTACACTTGGAGCGCACCAGGTCATGATTGGAGTCTATTCTATGTGCACTGTTTCTGGAGAACCTTTGGCACAAACAGCTCAGTCATTCATGCCAGACTTGATTTCTGGAGTTAACTGCAATATAAAAAAGGCACAGCAGTTGCTTCGCTCACTACTCCTCATTGGAACAATATTTGGCTTTTCATTAGGATGTATCGCCAGCACAATGCCTTGGTTCTTCCCCCAAGTGTTTACAAGAGATGCAGCCATTATTAATCAAATGCGGGGAGTAACATTGCCCTTTTTTCTTAGTATGTTGATCACACCACCCACGCTAAGCCTAGAGGGAACATTATTGGCGGCAAGAGATTTGAAATACCTTAGCTTCAGCATGGTATCATGCTTTTGTGGAGGCTGCATTTCACTTGTGCTCTTGAAAAACATTGGTTTTGGTCTCGTGGGAAGTTGGTGGATACTGGTTGCTTTTCAATGGGCTCGTTTTACTCTTGCATTCTCCAGGCTAGCATATCCGAAAAGTGTTCTGAGGATTGAAGAGTCTATATTGCATTTAAAAGCCGCTTAG___GCCAGATTAACTTCAGAAATTCTAGGTCTTATTGAAAGTGTTTTGTCCTTCTTAATTTGTCAGGATACAAGATAAATAATATTAATTACTAAATTTTTTGGGTTGCCGGGGGGTTATTTTTATCATTTGCTATTTATTGAAACTTGAATCACACGTAATATGTATTTCTTCTGAAGTATTACGTGTGGCACTGCACGTCTTATTTTGTAATTTAAGTTTTTGGATTACAGCAGTGTACTAAAATTTTATCCCCAAGTATATGAAAATTGGTATTGCTACC

Fln Alignment:

Contig14163___ELQSKGIWQQMKDIVGFAGPALGIWLSPHIMSLINTAVIGNCSSLELAALGPGTVLCDQLSYIFNFLSIATASLIATSLAKKNRAEAENHLSRLLLVAMACGLGMFTMIELCGTSILKAFVGANNSSLVPAAKTYVEIRGYAWPAVLITMVAQSASLGMQDSWSPLKVLGIQSLINLVTTILLCAYFRLGIAGAAFATATSQIIGAFLMLRSLHHKGYNPLAIVIPSVEELLQIIHIAGPVLLTLMSKVAFYTVITYMATSLGAITLGAHQVMIGVYSMCTVSGEPLAQTAQSFMPDLISGVNCNIKKAQQLLRSLLLIGTIFGFSLGCIASTMPWFFPQVFTRDAAIINQMRGVTLPFFLSMLITPPTLSLEGTLLAARDLKYLSFSMVSCFCGGCISLVLLKNIGFGLVGSWWILVAFQWARFTLAFSRLAYPKSVLRIEES
Q8W4G3_______________DLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVICDYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFIGLACGVTMMVLTRLFGSWALTAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAINGVGDVVLCTFLGYGIAGAAWATMVSQVVAAYMMMDALNKKGYSAFSFCVPSPSELLTIFGLAAPVFITMMSKVLFYTLLVYFATSMGTNIIAAHQVMLQIYTMSTVWGEPLSQTAQSFMPELLFGINRNLPKARVLLKSLVIIGATLGIVVGTIGTAVPWLFPGIFTRDKVVTSEMHKVIIPYFLALSITPSTHSLEGTLLAGRDLRYISLSMTGCLAVAGLLLMLLSNGGFGLRGCWYALVGFQWARFSLSLFRLLSRDGVLYSEDT

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
89			16	83	0.994512
90			16	83	0.994512
143	14	85			0.993533
144		14		14	0.984337
207		90		10	0.90298
208	90		10		0.90298
209			90	10	0.90298
951		50		50	1.0
1034		33		66	1.0
1311	40			60	1.0
2501		87	12		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain