SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14151

Length: 2468 nt

UniGene Fasta

>sp_v3.0_unigene14151
CGTCGTGACCTTGGCTGTCACTCAGTGAAGATAAAGAGGGTTTCCACATCTGTTTTTGTAGTTGATTGTGTATATATGAAGAGGTTGAGGTTCGGAATGGGCATTTGTATTAGTTCTGGTAACTAGTACAAGACCCCTGTGGGTTTGTTAGCAGGTCTCAGAGGCTCATTTTAATCTCTTAGTCACCCATCTGGTCATGGTCGTTGAAGGCATTTTGTCGCGGTGAAAATGGGATGTTTGTAGAAGGTGTCCAATGCTAGAAGAAAAGGTCATTGACAGAGATGTATAAGAATCAGCTCCAAGAGCTCGCTCAAAGGAGCTGCTTCAATCTGCCATCGTACTCCTGTATCAGAGAGGGGCCTGATCATGCACCCAGATTCAAATCTACTGTAAATTTCAATGGAGAAGTCTTCGAGAGCCCAAACTACTGCAGCACATTGAGACAGGCTGAACATGCTGCTGCAGAGGTGGCACTTAATACTCTTTCCCACAGAGGCCCTTCCCGAGCTCTTGCTGCAAGAATCCTGGATGAGACGGGGGTATACAAAAATTTGTTGCAAGAGATAGCTCAGAGAGCAGGAGCAGCACTGCCTGTGTATACTACTGTGCGTTCTGGTCTAGGTCATTTGCCCTATTTTACATGCACTGTGGAGTTAGCTGGGTTAAGCTATACGGGTGAAAGGGCCAAAAACAAAAAGCAGGCCGAGAAGAATGCTGCCATGACTGCCTGGTCAAGTTTAAAACATTTGGCACATCAACTTGGGTTTTGCTCACAGACACCAGCAGAGGGAGAATGTAATGATGAGCAGGAGCAAATCACTATTGCCAGGGCACTTGCACAACATAGGTCCAAGGAGATAGCATTGGCCCAACAGTTGAAACAACAACACTCTGCATCCAGGAGAAAAATGCTCACCCAGAGAGAGAGTAGCAGCCATTCTGTTGAACACCAACATTATGAACCCTGGGCTGGAGGAACATCACAATGGGTTTCTTCTGATTTGCCCGCAGAAGGCTGTTCCAGCTTCAGTTCTAGTCATAATCATCGTTGCCAGCAGCAGCTGCATCGTCCTGCTCTGCCATCGTCTGGGTCTAGGATTTTGCCCCTAATTAGGTCTATTTTTCCGCAAAGGAATAGATCGGGCTCTCTTCATGATTCACCGTCATCCTCCTCTCTCTCAAGGGAAGCTAATAGATCTCCTGCAGGTGACTGCGTTGGGAACTCTCTGCATGAGCCATTGCCATTAGCACTGTCTAGGGAAGCTATTGTAGCAAACATAGCTGGTGCAAATGCTAGAACTGTACATAGAAGAGCATCCCAGCAAGTGCCCACCCCATTTGAAGAACATGAGAGAGATGAAGAGGAATGGCTTAAGGGAGATCTCCCAAGGGATAACAGCATTCCTACATTGGGCGTTTCCAATGTACCAGAGTGGGCTGCAACATTTGCTTCTGCCAATTTGTCACCCTGGTCTAATTCAATGCAATCCTGGGGTTTGCATAGGCAGCAGCAACAGCAGCAGCAGCGGCAACAACAATGGATGCCACAAACGATTTCTCAACCTGGGTCATCCTTTTTAGCACCTGGATACTGTGGGTCTCCTTCATCAATGGCTGGACCTGTGACAATAAGGACATCAATACCAGTTTGCTCAGCCCCTCCCCGTCGAAGGCCTCATTCGGATTTCTTAAGCAATGACACCAATTTGGTGCCTCCACTCCAAACTGCACCGGCAGTTCGAATGCGATCTGTTATCCCAGTTTGCTCTAGTCCACCTGTGCGGAGGACTTTACCACAAAACCCAGACCCAAGTTCCTTAGATAATGAAGACTCCACACTTCAACTGCTCAATCAGCTCAGGCTTTGAAATTTGTTTAAAACAAGTTGATCTATTGATATTCTTCACATTTCACTCTGAAATTTTCCTCTCTTCCAGGCTGCTATTGATATGAGAGGGCAGTATCTGTTACAGATTCTGACTCTGCTTTTCGCTGTCGTGTTTTGTGAGGTTACAGAGCTGAATGTTTATGACATGTATTTTTGAGGGTGTTCAAAGCTCTCAACCTATATGACTAATGCTATTATCCATATAAATATCGTTGTAGCAGATCTCTGCTACCTATTTCTCTAATGCCATGAGTGCCTAACAGATTGCCACAAAGTAGTTGTGTATTTTGGAAGCTGTTCCCACTTCTGGTATCAGCGGTCTCTGGATATCATCATTTTGGTTTATCGTGAACGGGAGGTAGATTTTGATGCTAGGAGCAATTGAAACAAGGTCGGAGAGACATCACTTGTAAAGGCGGATCCTAAGGAATTTTGTTTTAAATTTTTAATCTGCAGTTTTCGATGTAGGGGTTTCAACCAATCTATTGTACTGCTTTCTGTATTCAAATTTTATCACTTTCTCTGTATTATATGTGATTGGGCTACGTTTCCTGCTCTCTAAAACTTTGGATCAACCTTC

Ace file of the UniGene sp_v3.0_unigene14151

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Double-stranded RNA binding protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T6H7_PHYPA	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Double-stranded RNA binding protein	-	-	7.907e-17	-

Source	Gene names
Sma3	At2g28380; At3g26932; At5g41070; At5g41070/MEE6_14; DRB1501; DRB1502; DRB1503; DRB1504; GSVIVT00019816001; GSVIVT00024541001; GSVIVT00031077001; GSVIVT00037908001; LOC_Os10g33970; OSJNBa0093B11.1; Os05g0150400; Os10g0480500; OsDRB2; OsI_03907; OsI_18477;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Uncharacterised protein family UPF0406	IPR019146	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G28380.1	DRB2 dsRNA-binding protein 2 chr2:12134098-12135915 REVERSE LENGTH=434	77%
RefSeq	Arabidopsis thaliana	NP_565672.1	dsRNA-binding protein 2 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002298650.1	predicted protein, partial [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAF9

Fln msg: your sequence is longer than subject: 529 - 325

Fln protein: MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKSTVNFNGEVFESPNYCSTLRQAEHAAAEVALNTLSHRGPSRALAARILDETGVYKNLLQEIAQRAGAALPVYTTVRSGLGHLPYFTCTVELAGLSYTGERAKNKKQAEKNAAMTAWSSLKHLAHQLGFCSQTPAEGECNDEQEQITIARALAQHRSKEIALAQQLKQQHSASRRKMLTQRESSSHSVEHQHYEPWAGGTSQWVSSDLPAEGCSSFSSSHNHRCQQQLHRPALPSSGSRILPLIRSIFPQRNRSGSLHDSPSSSSLSREANRSPAGDCVGNSLHEPLPLALSREAIVANIAGANARTVHRRASQQVPTPFEEHERDEEEWLKGDLPRDNSIPTLGVSNVPEWAATFASANLSPWSNSMQSWGLHRQQQQQQQRQQQWMPQTISQPGSSFLAPGYCGSPSSMAGPVTIRTSIPVCSAPPRRRPHSDFLSNDTNLVPPLQTAPAVRMRSVIPVCSSPPVRRTLPQNPDPSSLDNEDSTLQLLNQLRL*

Protein Length: 530

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGAAGATAAAGAGGGTTTCCACATCTGTTTTTGTAGTTGATTGTGTATATATGAAGAGGTTGAGGTTCGGAATGGGCATTTGTATTAGTTCTGGTAACTAGTACAAGACCCCTGTGGGTTTGTTAGCAGGTCTCAGAGGCTCATTTTAATCTCTTAGTCACCCATCTGGTCATGGTCGTTGAAGGCATTTTGTCGCGGTGAAAATGGGATGTTTGTAGAAGGTGTCCAATGCTAGAAGAAAAGGTCATTGACAGAG_-_ATGTATAAGAATCAGCTCCAAGAGCTCGCTCAAAGGAGCTGCTTCAATCTGCCATCGTACTCCTGTATCAGAGAGGGGCCTGATCATGCACCCAGATTCAAATCTACTGTAAATTTCAATGGAGAAGTCTTCGAGAGCCCAAACTACTGCAGCACATTGAGACAGGCTGAACATGCTGCTGCAGAGGTGGCACTTAATACTCTTTCCCACAGAGGCCCTTCCCGAGCTCTTGCTGCAAGAATCCTGGATGAGACGGGGGTATACAAAAATTTGTTGCAAGAGATAGCTCAGAGAGCAGGAGCAGCACTGCCTGTGTATACTACTGTGCGTTCTGGTCTAGGTCATTTGCCCTATTTTACATGCACTGTGGAGTTAGCTGGGTTAAGCTATACGGGTGAAAGGGCCAAAAACAAAAAGCAGGCCGAGAAGAATGCTGCCATGACTGCCTGGTCAAGTTTAAAACATTTGGCACATCAACTTGGGTTTTGCTCACAGACACCAGCAGAGGGAGAATGTAATGATGAGCAGGAGCAAATCACTATTGCCAGGGCACTTGCACAACATAGGTCCAAGGAGATAGCATTGGCCCAACAGTTGAAACAACAACACTCTGCATCCAGGAGAAAAATGCTCACCCAGAGAGAGAGTAGCAGCCATTCTGTTGAACACCAACATTATGAACCCTGGGCTGGAGGAACATCACAATGGGTTTCTTCTGATTTGCCCGCAGAAGGCTGTTCCAGCTTCAGTTCTAGTCATAATCATCGTTGCCAGCAGCAGCTGCATCGTCCTGCTCTGCCATCGTCTGGGTCTAGGATTTTGCCCCTAATTAGGTCTATTTTTCCGCAAAGGAATAGATCGGGCTCTCTTCATGATTCACCGTCATCCTCCTCTCTCTCAAGGGAAGCTAATAGATCTCCTGCAGGTGACTGCGTTGGGAACTCTCTGCATGAGCCATTGCCATTAGCACTGTCTAGGGAAGCTATTGTAGCAAACATAGCTGGTGCAAATGCTAGAACTGTACATAGAAGAGCATCCCAGCAAGTGCCCACCCCATTTGAAGAACATGAGAGAGATGAAGAGGAATGGCTTAAGGGAGATCTCCCAAGGGATAACAGCATTCCTACATTGGGCGTTTCCAATGTACCAGAGTGGGCTGCAACATTTGCTTCTGCCAATTTGTCACCCTGGTCTAATTCAATGCAATCCTGGGGTTTGCATAGGCAGCAGCAACAGCAGCAGCAGCGGCAACAACAATGGATGCCACAAACGATTTCTCAACCTGGGTCATCCTTTTTAGCACCTGGATACTGTGGGTCTCCTTCATCAATGGCTGGACCTGTGACAATAAGGACATCAATACCAGTTTGCTCAGCCCCTCCCCGTCGAAGGCCTCATTCGGATTTCTTAAGCAATGACACCAATTTGGTGCCTCCACTCCAAACTGCACCGGCAGTTCGAATGCGATCTGTTATCCCAGTTTGCTCTAGTCCACCTGTGCGGAGGACTTTACCACAAAACCCAGACCCAAGTTCCTTAGATAATGAAGACTCCACACTTCAACTGCTCAATCAGCTCAGGCTTTGA___AATTTGTTTAAAACAAGTTGATCTATTGATATTCTTCACATTTCACTCTGAAATTTTCCTCTCTTCCAGGCTGCTATTGATATGAGAGGGCAGTATCTGTTACAGATTCTGACTCTGCTTTTCGCTGTCGTGTTTTGTGAGGTTACAGAGCTGAATGTTTATGACATGTATTTTTGAGGGTGTTCAAAGCTCTCAACCTATATGACTAATGCTATTATCCATATAAATATCGTTGTAGCAGATCTCTGCTACCTATTTCTCTAATGCCATGAGTGCCTAACAGATTGCCACAAAGTAGTTGTGTATTTTGGAAGCTGTTCCCACTTCTGGTATCAGCGGTCTCTGGATATCATCATTTTGGTTTATCGTGAACGGGAGGTAGATTTTGATGCTAGGAGCAATTGAAACAAGGTCGGAGAGACATCACTTGTAAAGGCGGATCCTAAGGAATTTTGTTTTAAATTTTTAATCTGCAGTTTTCGATGTAGGGGTTTCAACCAATCTATTGTACTGCTTTCTGTATTCAAATTTTATCACTTTCTCTGTATTATATGTGATTGGGCTACGTTTCCTGCTCTCTAAAACTTTGGATCAACCTTC

Fln Alignment:

Contig14151___MLTQRESSSHSVEHQHYEPWAGGTSQWVSSDLPAEGCSSFSSSHNH----RCQQQLHRPALPSSGSRILPLIRSIFPQRNXXXXXXXXXXXXXXXXXXXXX---PAGDCVGNSLHEPLPLALSREAIVANIAGANARTVHRRASQQVPTPFEEHERDEEEWLKGDLPRDNSIPTLGVSNVPEWAATFASANLSPWSNSMQSWGLHXXXXXXXXXXXXWMPQTISQPGSSFLAPGYCGSPSSMAGPVTIRTSIPVCSAPPRRRPHSDFLSNDTNLVP-PLQTAPAVRMRSVIPVCSSPPVRRTLPQNPDPSSLDNEDST
D5AAF9_______________MLTQRESSSHSVELQHYEPWAGGASQWVSSDLPAEGCSSFSSSHNHHRQQQQQQQLHRPALPSSGSRILPLIRSIFPQRNRSGSLHDSPSSSSLSREAIAANRSPAGDCVGSSLHESLPLALSREAIVANRAGANARTVHRRTSQQVPTPFEEHERDEEEWLKGDLPRDNSIPTF--SNVSEWAATFGSTNLSPWSNSMQSWGLHRQQQQQQQRQQQWMPQTIPQPGSSFLAPGYCGSPSSMAGPVTIRTSIPVCSAPPLRRSHSDFLSNDTNLVPSPLQTAPAVQIRSVIPVCSSPPLRRTLPQNPDPSSLDNEDST

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
338		66	33		0.997452
504	10	90			0.90298
653	80		20		0.995493
1326	75		25		0.996473
2134		40		60	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1515	1527	CAG CAG CAG CAG C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain