SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14136

Length: 1720 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14136

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=U-box domain-containing protein 62; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%

Source	Gene names
Sma3	At2g40640; At5g05230; GSVIVT00029454001; K18I23.3; OSJNBa0094J08.30; OsI_14060; OsJ_13100; PHYPADRAFT_166531; POPTRDRAFT_1108254; POPTRDRAFT_226499; PUB62; PUB63; RCOM_0690100; RCOM_1138920; T2P4.1; T7D17.18; VITISV_024206;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	U box domain	IPR003613	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05230.1	RING/U-box superfamily protein chr5:1551593-1553543 FORWARD LENGTH=363	52%
RefSeq	Arabidopsis thaliana	NP_196142.3	U-box domain-containing protein 62 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002325928.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q6DBN5

Fln msg: your sequence is shorter than subject: 294 - 363

Fln protein: AGGGVAASSGFYRDALVKEPPALPRENNNSSATANTASLHEHHQARIPPGLHHEGTLPVASVPDADNYYTQLLQSTASLAPKDAGVDEGGAFGERKGTTASTESSESSLRIILSDPLTGVLMDDATILTCGHSFGSGGLQHVLEARACITCGQPVANDSVAPNHALRAVVQAFRREEEFQSMTSKSAKRRRDKFEQEKTGYSDPMSMDCSRGKGVQFPFVVGDRVVIKGNKRTPERFVGREAVITTQCLNGWYVVKTLDNAESVKLQYRSLMKVGDHQSSSELSQKALAPSWL*

Protein Length: 295

Fln nts: GGCAGGAGGAGGGGTGGCTGCATCCTCTGGTTTTTATAGAGATGCATTGGTGAAGGAACCTCCTGCACTGCCCAGAGAAAATAATAACAGCAGCGCCACCGCGAACACGGCCTCTTTACATGAACATCACCAAGCAAGGATTCCCCCTGGCTTGCACCACGAGGGGACCCTTCCAGTTGCCTCTGTGCCCGACGCCGATAACTATTATACTCAATTGCTGCAATCAACCGCGTCACTTGCTCCGAAGGACGCGGGAGTGGACGAGGGAGGTGCTTTCGGAGAAAGGAAAGGCACGACCGCAAGCACAGAGTCATCAGAATCCTCGCTGCGGATTATTCTATCCGATCCTCTCACAGGTGTACTTATGGATGATGCGACAATATTAACTTGTGGGCACTCCTTTGGAAGCGGTGGTCTCCAACATGTACTTGAAGCGCGGGCCTGCATTACTTGTGGTCAGCCAGTTGCAAATGATTCTGTAGCTCCTAACCATGCTCTTAGAGCAGTAGTGCAGGCCTTCAGGCGGGAAGAGGAATTTCAATCAATGACATCAAAATCAGCCAAAAGGAGGAGAGACAAGTTTGAGCAGGAGAAAACTGGCTATAGTGATCCAATGTCCATGGATTGTTCTAGAGGTAAAGGGGTTCAGTTCCCATTTGTTGTTGGTGATCGAGTGGTTATTAAGGGAAACAAGCGAACTCCAGAACGATTTGTTGGTCGTGAGGCTGTTATCACAACTCAGTGTTTGAATGGATGGTATGTAGTAAAAACTTTAGATAATGCGGAGAGTGTCAAGCTGCAATATAGGTCTCTTATGAAGGTTGGGGATCATCAATCTTCAAGTGAACTTTCTCAGAAGGCTTTGGCACCAAGCTGGCTATGA___TCTCATAGGGTATCTGATGATAATGAAATCCTTGGGGAGTGTAATATTAGTTTCGACTATGCAACAAAGGTAGTGGTGAAAGCGACAAATGTTTTCTAGTTTATCTTTAACTTTGCTGTTAAGATGGCGTGCATCAAGGGCATGCTTGTGGGAAACACTTTCTTGCAATCACCATTGCGGCTAGCCATATGCATGCTTGTGGGAAACACTTTCTTGCAATCACCACTGCGGCTAGCCATACGTGTTCCACCAACAATGTTGAAGAGGCCTTTGTTATCATTCGTCTGGTGCTTATGTAATATTTTATCAGTTCAAATATATGACTTTGGTTTTGTAAATTGCCCCTAAGCTGTATTGAGTCTTAGATTTTCTATTTTATTTCAGTTGAATGCATCCTCCATTATGTCCAAAATTTTCTCTGTAAGTGCTGCCAATGAAATCAGATCGATCCTTGTATTTATCTCACAAAGAGTTGTTTCCGCCTTATATAGAAAGTTGAAGATACTCTATTTTGATAGAATGTGCCAAGTCAAAAATATTATTTTCTTTTTGCTTGGCATCGCTCTTTCTTTAGTCACGAGCATGCTGATTCTGATGTCTGAATTGTGACTGAGCTAGTTACTTCTTTTCTTAGGTCATCATATTTATTAGTTTCCATATTGGAATTTTCAATTCTATATTTTTTACAGATTTTGTTGTGGCTAGAACTTTGTGCTACACCAGTGGATGTCATAAGTTTATAATTTACTCTGGCCATTGTGAGGCCTCATTATTTTAACAGCGTCTTTTGCATAATCTATGCTCCACTTTCTTCAATACTATCAGGAAGTGTACATT

Fln Alignment:

Contig14136___YYTQLLQST-ASLAPKDA----GVDEGGAFGERKGXXXXXXXXXXXLRIILSDPLTGVLMDDATILTCGHSFGSGGLQHVLEARACITCGQPVANDSVAPNHALRAVVQAFRREEEFQSMTSKSAKRRRDKFEQEKTGYSDPMSMDCSRGKGVQFPFVVGDRVVIKGNKRTPERFVGREAVITTQCLNGWYVVKTLDNAESVKLQYRSLMKVGDHQSSSELSQKALAPSWL
Q6DBN5_______________YYSQHFKTVEASFVSRNEESSIAADNGCDFSGRRDLSSSSSNSIESLRTILSDPTTGSLMADAMILPCGHTFGAGGIEQVKQMKACCTCSQPVSEDSITPNLTLRVAVQAFCREENSQS--NHPSKRKREGFDQERRAFGVTNHSGRSRNKSNHFPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKAPEDPSAKATPNK-MVSNWL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
686			88	11	0.923564
687		11	88		0.923564
689	88	11			0.923564
690	77			11	0.968132
750	88			11	0.923564
818	90		10		0.90298
819	90	10			0.90298
823		18		81	0.999994
1058		11		88	0.923564
1209			11	88	0.923564
1211		11	88		0.923564
1212	11		88		0.923564
1213		12		87	0.992554
1282	10	90			0.90298
1300		88		11	0.923564
1363		86		13	0.999973
1435			50	25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain