SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14130

Length: 3155 nt

UniGene Fasta

>sp_v3.0_unigene14130
TTTACCAGACCCTACATTCTAGCTGGTTCGCAAAACCGGAGTAGTGTTAACAGGTAGGTTTGCTGTCGAATTCGGGTGGTTTGCACGAAAACCGCTTTGTGGCGAGCAGGAAGGAGCCTTTTCCCTCCTAGAAAGCCCAAGGTCTGGGATAATAAAAGAGGGAACAGAGACGTCTCTCCCCAGCTCTGCTTCCTTCTTGCAGGGCTGTCTGTTATTAATAGGGGAGGAAGGATTAATTCCATCCATGGAGCGAGCAGATTCACTGGCAAGTGAAAGGAAAGGGCACAAGCGGAAACTGGGAGAAACCTCGCTGGAGACACTCGAGCCCGTTGACACCAGTAGTCCTCTACCTCAGGACGTCCAAATTCAGGTTAACAAGCTCAATTCTAGCTTCTCATGGCGGGAGGCGGATCGCCTTGTTGCCAGGCGAGCGGCTCACGCGCTTGCAGAGTTCGCCAAACACGAAGAGCACGTCGACATTATTGTGGATGGAGGAGCTATACCTGCTTTGGTTCAACATCTTCAAGCACCTGCAGTTGGTGAGGGAGAGGGACCAATTGCTTGTGAGCACGAGGTTGAAAAGGATGCTGCGTTTGCCTTGGGACTCCTTGCAGTGAAGCCAGAGCATCAACGACTCATTGCAGATGCAGGTGCTCTTTCCTGTCTGGTTTCCTTGTTAAAAAGACGTGGAAATGGTTCGAATGATCGTGCTGTTAATGGTGTCCTTCGAAGAGCTGCTGATGCTATCACAAATCTGGCTCATGAAAATGGCACCATCAAAACTTGCATCAGGACGGAGGGAGGAATTCCTCCTCTAGTTGATTTGCTTGAGTCAACTGATACCAAGGTGCAGCGAGCAGCAGCAGGTGCATTGCGTACTTTAGCATTCAAAAATGAAGCAAACAAGAATCAGATTGTTGAATGCAATGCTCTTCCCACCCTTATTTTCATGTTGCGTTCTGAGGATGTTGGCATCCACTATGAGGCGGTGGGAGTAATTGGGAATTTGGTTCATTCATCTACCAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTTATTGGTCTGTTGAGTTCACGGTGCCAGGAAAGCCAAAGGGAAGCAGCATTGTTATTAGGGCAGTTTGCAACAACAGATCCTGAATGCAAGGTTCACATTGTCCAACGTGGTGCTGTTCGTCCTCTTTCTAAAATGCTCCAATTGCCAGATGCCCAACTCAAGGAGATGGCAGCATTTGCTCTTGGTAGATTAGCACAGAATTCACACAACCAAGCTGGCATTGTCCATGAAGGGGGACTAATACCGCTTCTTGATCTTCTAGAGTCTAAAAATGGGTCTCTTCAACACAATGCAGCTTTTGCTCTTTATGGGCTTGCAGATAATGAGGATAATATATCTGACATCACAAAGGAGGGAGGTGTTCAAAAGTTACAAGATGTAGAATTGATTGTCCAGGCATCAAAGGACTGTGTTGCCAAGACTTTAAAGAGGATTGAAGAAAAAATTCATGGAAGAGTATTGAAGCACTTACTTTATCTAATGCGTGTATCAGATAAAATTGTTCAAAGACGCGTTGCTTTGGCTCTTGCTCATCTTTGTTGTGTTGATGACCAGAGAATGATCTTCATTGATAACAATGGTTTGGATGTACTACTTGGACTATTGGAGCCTGGTTCAAATTCAAAACAACAACATGATGGTGCTGTAGCATTACATACACTTGCAAAAAGGGCTACTGCTGATTGTCCAATAGATGCCGCTCTTCCGCCTCCAACACCACAGGTATATTTGGGAGAGCAGTATGTCAACAGTCACACTTTATCAGATGTTACCTTTTTAGTGGAAGGTAGGCGATTTTATGCCCACAGGATTGCACTTCTGGCATCTTCAGATGCATTTCGTGCCATGTTTGATGGTGGTTACCGGGAAAAGGAGGCAAAGGATATTGAAATTCCAAACATAACCTGGGCAGTTTTTGAACTGATGATGAGATTTATATACACAGGTACAGTAGAGGTGACAGCAGATATTGCACAAGATCTTCTGAGGGCTGCTGATCAATACCTTTTGGAAGGCCTCAAACGTTTGTGTGAATATTCTATTGCACAGGACCTTACTGTGGAGAATTTTGCAAATATATATGATCTTGCTGAGTCCTATCATGCAACTTCTTTGGGCCATATGTGTGTTCTGTACTTTCTGGAGCACCATGAACAGATGTCTAACATGTCTGGCTACCCTTCCCTTGTGGAACGCTTACTACCAGAGATACGTGATTACTTGTTTAGAATATTAAGGCCACAGCCTTATATGCCTTCACAGTAAAGGAAGTCATGATCATTTGATTGGCTTCTTGGATGGTCTCATCTTCGCTGAGAACTAGTGCAGATAGAGGTATTTTGAAGGTGTTTATCAGCATGCCATGACTACAGCTTGTTATATAAGATGCACTGATTTGTTAAGTGAAATGATTGCGAGACGTCAACTGAATGACACATTCTCAGATCTTTTCAAAATGAACATAAAAGTTTGAAACCAGAGATGAGCCGTCAATTGATATTTGACGGTCTTTTGTGTTTCTCTGTCTCATCTAACACTTGAATTTTTTTTCTGTAACAGAAGCTTGACATTTCTACTTTTGTTGTATTCAATGAAATGGTTGATTAGTTCAAGGCTGGAAGACTGATGGTTGGAGGATTAATCTATATGAAGCCTTTGGTTGAAGAAGCCACAGATGGTTTCTTAGCTGAATGCCATATTGTAATGAATAGCATTTTCAGATGTCCTTCTTGTGATTATAACTTGCCCTTCTTCAATTGACAATCAATGACAATTAGGTCTAAGCAAAGGAACAGGCATTCCAATGTCTGTATTTTCTAATGATACTGCTTCTTGTTTTATTTCAACCTGTAAATGTAGCAGGCCTTTTTCTAAGAACTTTGAAGTAAGCATTTGCCAGCTTGAGCCTATAACAGCGTTTTTGGTACATTGTTGTAATTTTAGGTTCGGGCATTGTGTTTTATTTAGTTGTTTAACTGAAGTCTAAACTATTAAGGAAACATAAATCTTTCAACCTGGAATTTTAATCTGTAATGCTCGTTTCTTTTCCATCCTTTCCAAAGTCCAATGTGTTGATTGCATTGAG

Ace file of the UniGene sp_v3.0_unigene14130

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BTB multi-domain protein	-	-	5.0e-26	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Sma3	Predicted protein	-	-	0.0	-

Source	Gene names
Sma3	PHYPADRAFT_106616;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19330.1	ARIA ARM repeat protein interacting with ABF2 chr5:6508095-6512701 REVERSE LENGTH=710	70%
RefSeq	Arabidopsis thaliana	NP_850852.1	ARM repeat protein interacting with ABF2 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002312519.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMS2

Fln msg: your sequence is longer than subject: 697 - 390

Fln protein: MERADSLASERKGHKRKLGETSLETLEPVDTSSPLPQDVQIQVNKLNSSFSWREADRLVARRAAHALAEFAKHEEHVDIIVDGGAIPALVQHLQAPAVGEGEGPIACEHEVEKDAAFALGLLAVKPEHQRLIADAGALSCLVSLLKRRGNGSNDRAVNGVLRRAADAITNLAHENGTIKTCIRTEGGIPPLVDLLESTDTKVQRAAAGALRTLAFKNEANKNQIVECNALPTLIFMLRSEDVGIHYEAVGVIGNLVHSSTNIKKEVLLAGALQPVIGLLSSRCQESQREAALLLGQFATTDPECKVHIVQRGAVRPLSKMLQLPDAQLKEMAAFALGRLAQNSHNQAGIVHEGGLIPLLDLLESKNGSLQHNAAFALYGLADNEDNISDITKEGGVQKLQDVELIVQASKDCVAKTLKRIEEKIHGRVLKHLLYLMRVSDKIVQRRVALALAHLCCVDDQRMIFIDNNGLDVLLGLLEPGSNSKQQHDGAVALHTLAKRATADCPIDAALPPPTPQVYLGEQYVNSHTLSDVTFLVEGRRFYAHRIALLASSDAFRAMFDGGYREKEAKDIEIPNITWAVFELMMRFIYTGTVEVTADIAQDLLRAADQYLLEGLKRLCEYSIAQDLTVENFANIYDLAESYHATSLGHMCVLYFLEHHEQMSNMSGYPSLVERLLPEIRDYLFRILRPQPYMPSQ*

Protein Length: 698

Fln nts: TTTACCAGACCCTACATTCTAGCTGGTTCGCAAAACCGGAGTAGTGTTAACAGGTAGGTTTGCTGTCGAATTCGGGTGGTTTGCACGAAAACCGCTTTGTGGCGAGCAGGAAGGAGCCTTTTCCCTCCTAGAAAGCCCAAGGTCTGGGATAATAAAAGAGGGAACAGAGACGTCTCTCCCCAGCTCTGCTTCCTTCTTGCAGGGCTGTCTGTTATTAATAGGGGAGGAAGGATTAATTCCATCC_-_ATGGAGCGAGCAGATTCACTGGCAAGTGAAAGGAAAGGGCACAAGCGGAAACTGGGAGAAACCTCGCTGGAGACACTCGAGCCCGTTGACACCAGTAGTCCTCTACCTCAGGACGTCCAAATTCAGGTTAACAAGCTCAATTCTAGCTTCTCATGGCGGGAGGCGGATCGCCTTGTTGCCAGGCGAGCGGCTCACGCGCTTGCAGAGTTCGCCAAACACGAAGAGCACGTCGACATTATTGTGGATGGAGGAGCTATACCTGCTTTGGTTCAACATCTTCAAGCACCTGCAGTTGGTGAGGGAGAGGGACCAATTGCTTGTGAGCACGAGGTTGAAAAGGATGCTGCGTTTGCCTTGGGACTCCTTGCAGTGAAGCCAGAGCATCAACGACTCATTGCAGATGCAGGTGCTCTTTCCTGTCTGGTTTCCTTGTTAAAAAGACGTGGAAATGGTTCGAATGATCGTGCTGTTAATGGTGTCCTTCGAAGAGCTGCTGATGCTATCACAAATCTGGCTCATGAAAATGGCACCATCAAAACTTGCATCAGGACGGAGGGAGGAATTCCTCCTCTAGTTGATTTGCTTGAGTCAACTGATACCAAGGTGCAGCGAGCAGCAGCAGGTGCATTGCGTACTTTAGCATTCAAAAATGAAGCAAACAAGAATCAGATTGTTGAATGCAATGCTCTTCCCACCCTTATTTTCATGTTGCGTTCTGAGGATGTTGGCATCCACTATGAGGCGGTGGGAGTAATTGGGAATTTGGTTCATTCATCTACCAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTTATTGGTCTGTTGAGTTCACGGTGCCAGGAAAGCCAAAGGGAAGCAGCATTGTTATTAGGGCAGTTTGCAACAACAGATCCTGAATGCAAGGTTCACATTGTCCAACGTGGTGCTGTTCGTCCTCTTTCTAAAATGCTCCAATTGCCAGATGCCCAACTCAAGGAGATGGCAGCATTTGCTCTTGGTAGATTAGCACAGAATTCACACAACCAAGCTGGCATTGTCCATGAAGGGGGACTAATACCGCTTCTTGATCTTCTAGAGTCTAAAAATGGGTCTCTTCAACACAATGCAGCTTTTGCTCTTTATGGGCTTGCAGATAATGAGGATAATATATCTGACATCACAAAGGAGGGAGGTGTTCAAAAGTTACAAGATGTAGAATTGATTGTCCAGGCATCAAAGGACTGTGTTGCCAAGACTTTAAAGAGGATTGAAGAAAAAATTCATGGAAGAGTATTGAAGCACTTACTTTATCTAATGCGTGTATCAGATAAAATTGTTCAAAGACGCGTTGCTTTGGCTCTTGCTCATCTTTGTTGTGTTGATGACCAGAGAATGATCTTCATTGATAACAATGGTTTGGATGTACTACTTGGACTATTGGAGCCTGGTTCAAATTCAAAACAACAACATGATGGTGCTGTAGCATTACATACACTTGCAAAAAGGGCTACTGCTGATTGTCCAATAGATGCCGCTCTTCCGCCTCCAACACCACAGGTATATTTGGGAGAGCAGTATGTCAACAGTCACACTTTATCAGATGTTACCTTTTTAGTGGAAGGTAGGCGATTTTATGCCCACAGGATTGCACTTCTGGCATCTTCAGATGCATTTCGTGCCATGTTTGATGGTGGTTACCGGGAAAAGGAGGCAAAGGATATTGAAATTCCAAACATAACCTGGGCAGTTTTTGAACTGATGATGAGATTTATATACACAGGTACAGTAGAGGTGACAGCAGATATTGCACAAGATCTTCTGAGGGCTGCTGATCAATACCTTTTGGAAGGCCTCAAACGTTTGTGTGAATATTCTATTGCACAGGACCTTACTGTGGAGAATTTTGCAAATATATATGATCTTGCTGAGTCCTATCATGCAACTTCTTTGGGCCATATGTGTGTTCTGTACTTTCTGGAGCACCATGAACAGATGTCTAACATGTCTGGCTACCCTTCCCTTGTGGAACGCTTACTACCAGAGATACGTGATTACTTGTTTAGAATATTAAGGCCACAGCCTTATATGCCTTCACAGTAA___AGGAAGTCATGATCATTTGATTGGCTTCTTGGATGGTCTCATCTTCGCTGAGAACTAGTGCAGATAGAGGTATTTTGAAGGTGTTTATCAGCATGCCATGACTACAGCTTGTTATATAAGATGCACTGATTTGTTAAGTGAAATGATTGCGAGACGTCAACTGAATGACACATTCTCAGATCTTTTCAAAATGAACATAAAAGTTTGAAACCAGAGATGAGCCGTCAATTGATATTTGACGGTCTTTTGTGTTTCTCTGTCTCATCTAACACTTGAATTTTTTTTCTGTAACAGAAGCTTGACATTTCTACTTTTGTTGTATTCAATGAAATGGTTGATTAGTTCAAGGCTGGAAGACTGATGGTTGGAGGATTAATCTATATGAAGCCTTTGGTTGAAGAAGCCACAGATGGTTTCTTAGCTGAATGCCATATTGTAATGAATAGCATTTTCAGATGTCCTTCTTGTGATTATAACTTGCCCTTCTTCAATTGACAATCAATGACAATTAGGTCTAAGCAAAGGAACAGGCATTCCAATGTCTGTATTTTCTAATGATACTGCTTCTTGTTTTATTTCAACCTGTAAATGTAGCAGGCCTTTTTCTAAGAACTTTGAAGTAAGCATTTGCCAGCTTGAGCCTATAACAGCGTTTTTGGTACATTGTTGTAATTTTAGGTTCGGGCATTGTGTTTTATTTAGTTGTTTAACTGAAGTCTAAACTATTAAGGAAACATAAATCTTTCAACCTGGAATTTTAATCTGTAATGCTCGTTTCTTTTCCATCCTTTCCAAAGTCCAATGTGTTGATTGCATTGAG

Fln Alignment:

Contig14130___PQVYLGEQY---VNSHTLSDVTFLVEGRRFYAHRIALLASSDAFRAMFDGGYREKEAKDIEIPNITWAVFELMMRFIYTGT---VEVTADI----------------AQDLLRAADQYLLEGLKRLCEYSIAQDLTVENFANIYDLAESYHATSLGHMCVLYFLEHHEQMSNMSGYPSLVE
B8LMS2_______________PESNLGQQFGALLEDVENADVTFDVSGEKFHAHRVVLAARSPVFKSMFFGSSEEWNDKEISIEGTKPEVFKAMLHFIYRDTLPDLEEHADLEELSDPSPCFLTPETMIEYLLTAADRYGLRQLRWLCESRISQGITVSTVAKILELAQRYQASQLKSACLKFAASNLEEVMKSEGFEYLKE

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
571		80		20	0.999996
592	33		66		1.0
811			80	20	0.999996
943		12		87	0.992554
1038	85		14		0.993533
1071	11			88	0.923564
1075			11	88	0.923564
1095	88		11		0.923564
1101			90	10	0.90298
1102		90	10		0.90298
1103		90	10		0.90298
1104	90		10		0.90298
1107	10		90		0.90298
1252		12		87	0.992554
2004	20			80	0.995493
2020	80			20	0.995493
2024			80	20	0.995493
2027		20	80		0.995493
2092	33		66		0.997452
2406	18			81	0.999994
2408			20	80	0.999996
2409		20		80	0.999996
2414	87	12			0.992554
2517	18	81			0.999994
2609		28		71	1.0
2732			87	12	0.992554
2787		12		87	0.992554
2788		87		12	0.992554
2819	12			87	0.992554
2821		87	12		0.992554
2822			12	87	0.992554
2823			12	87	0.992554
2843	16		83		0.994512
2977		66		33	0.997452
2979	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain