SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14123

Length: 1838 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14123

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAM-like protein [Prunus persica]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Sma3	NAC domain protein, IPR003441	-	-	-

Source	Gene names
Sma3	ANAC; ATAF; ATAF1; At1g01720; At1g26870; At1g52880; At1g52890; At1g61110; At1g61110/F11P17_16; At1g69490; At1g77450; At1g77450/T5M16_4; At2g24430; At3g04070; At3g15500; At3g15510; At4g27410; At5g07680; At5g08790; At5g08790/T2K12_140; At5g08980; At5g13180;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of cell size	GO:0008361	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	positive regulation of asymmetric cell division	GO:0045770	Biological Process	-
Sma3	somatic stem cell division	GO:0048103	Biological Process	-
Sma3	root cap development	GO:0048829	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G61110.1	anac025, NAC025 NAC domain containing protein 25 chr1:22516730-22518055 FORWARD LENGTH=323	64%
RefSeq	Arabidopsis thaliana	NP_564771.1	NAC domain containing protein 25 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002305677.1	NAC domain protein, IPR003441 [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZG8

Fln msg: W1: There is no M at the beginning,

Fln protein: SPASFSESHQHQQPQLPPGFRFHPTDEELVVHYLKKKASSTPLPVTIIAEIDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSTSAGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRLADVSRPARKKGSLRLDDWVLCRIYNKKTSAEKLALEQNESSMDVPMEAIDEKEMVNQPSSTSIEHSGIEQNSPSSDLLNKMGPSPTSHNGVPPRVLPMNTNISSPNLDFFQKIITPSSAGTPKAPVQNTEFNPISSSINHPWINYDSIDLLSGLHPDSSSSKPSSSSDPISEKEEVQSSLRLETSSPEEQKPFFNFSLEGLEYPFSHLDQITLPDPYQDYFTSWTSSDLPRFYANDVHFC*

Protein Length: 387

Fln nts: CAATCACTTCTGCTTCTTCATCTCGATCCAGATTCCATTTTCATTTCAGCTTATCCTTCTGGTTCTTGCAATTCCCTTGGCCTTTAAGTTTGCGGACTGGCTTTGCTTTGTTGGTTTTCTGAGATTGAAGCCCAGCTTCCTTCTCGGAGTCGCATCAGCATCAGCAGCCACAGCTGCCTCCGGGATTTCGATTTCACCCCACAGATGAGGAGTTGGTTGTTCATTACTTGAAGAAGAAGGCATCTTCCACGCCTCTGCCTGTGACGATTATTGCAGAAATTGACCTTTACAAGTTTGATCCCTGGGAGCTACCTGAGAAGGCAACCTTTGGAGAGCAAGAATGGTATTTTTTCAGCCCAAGGGACAGGAAATACCCAAACGGGGCTAGACCTAATAGAGCTGCAACATCTGGGTACTGGAAAGCTACTGGAACGGACAAGCCTATATTAACATCTACATCAGCAGGTACACAGAAGGTGGGAGTGAAGAAGGCCCTGGTGTTCTATGGAGGCAGACCACCCAAAGGGATAAAAACCAACTGGATCATGCATGAATACCGTCTTGCTGATGTTAGCAGGCCTGCAAGAAAGAAAGGCAGCTTAAGACTGGATGATTGGGTTCTCTGTCGAATTTACAACAAAAAGACAAGTGCTGAGAAGTTAGCACTAGAGCAGAATGAAAGCTCCATGGATGTGCCAATGGAGGCCATCGATGAAAAGGAGATGGTGAATCAACCCTCCTCAACTTCAATCGAGCATAGCGGTATTGAACAGAACAGTCCATCTTCTGACCTTTTGAACAAAATGGGACCATCTCCAACAAGCCACAACGGGGTTCCCCCTCGTGTTCTGCCCATGAATACTAATATCAGTTCGCCGAACCTGGACTTCTTCCAAAAGATAATCACCCCTTCCAGTGCCGGTACCCCCAAAGCTCCAGTGCAGAATACAGAATTCAACCCAATTTCCTCCTCCATCAACCACCCATGGATAAATTACGATTCAATAGACTTATTGTCAGGATTGCATCCTGATTCCAGCAGTTCCAAGCCATCATCATCATCAGACCCCATTTCAGAGAAAGAAGAAGTTCAGAGCAGCTTAAGATTGGAAACTTCTTCACCAGAGGAGCAAAAGCCATTCTTTAATTTCAGTCTGGAAGGTCTAGAATACCCCTTCTCTCATCTGGACCAAATAACTCTTCCTGATCCTTATCAAGACTACTTTACAAGTTGGACCAGTTCAGACCTACCAAGGTTTTATGCTAACGACGTGCACTTCTGTTGA___GTAGTTTGACCAGTTCAAACCTACCAAGTTTTTTCCCTAACAACATGCACTTGGTCATGAACTTACAGCAAGACTTATTGGCCCTGGTTAAATAACTTTTGATAAGTCTGCTTGCAGTTCAGTCCCTGCCTTTGAGTTCATTGACTGAGAGTAAGGCTAGATGGCCCTGGGTAGAATGATTTTTTTAAGGAGTATATCTGTACAGGTTATCTAGGATTTGTTAATAAGCCAAGGGGTTGGATTGGTTGGTAAGAAGAATGGGTATTGCTAAATGATTTTTTGAAAGAGAATATCTGTACAGGCTATAGGATTTGCTTATAACTCCCTGGGAATGGGCTGGGATGGCCGGTAAGAAGAAAATGGGTATTGCTAGCCGCACCAACATTCAATTTTCAATTTTTCCCAGCGATATGCTCTCCTATTCACCATTGATAGCCTACTTTATGCGGAGTGGGCAGGTTTTCAAAAACGGAGCCATTTATGTTTGGACCAAGCCAAGGTTTCCAAATTCAAATATAAATTCAATGTATGCGATTTCCAAATGAATGTGAA

Fln Alignment:

Contig14123___QPQLPPGFRFHPTDEELVVHYLKKKASSTPLPVTIIAEIDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSTSAGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRLADVSRPARKKGSLRLDDWVLCRIYNKKTSAEKLALEQNESSMDVPM----EAIDEKEMVNQPSSTSIEHSGIEQNSPSSDLLNKMGPSP-----TSHNGVPPRVLPMNTNISSPNLDFFQKIITPSSAGTPKAPVQNTEFNPISSSINHPWINYDSIXXXXXXXXXXXXXXXXXXXXXXXEKEEVQSSLRLETSSPEEQ-------KPFFNFSLEGLEYPFSHLDQITLP---DPYQDYFTSWT
A9NZG8_______________QLNLPPGFRFFPTDDELVVHYLCRKAASQAIAVPIIAEVDLYKFDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPI--TAKGSNKRVGIKKALVFYVGKAPKGNKTNWIMHEYRLADVNRSAKKKGSLRLDDWVLCRIYNKKSSAEKLAKEQKEWSSEEAMEQFHEEIDEKVPGILPTGNTIMNSSIEHSERTSQDSTISAPSPNCRTASNHDSRASAITSLSYN-SNP---IFEQNLNLSNARS--APMEIPELVPFFSSMNNHRTNYDSADLIPPILLTDSSCSMQSSHDLKSEKEEVQSSFRLEELMQQQQQENAGLNQQMFSFGFESLQNPFPSLDQIQPPTNNDPFQDYLASLT

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
137	33	66			0.997452
138		66		33	0.997452
139	66			33	0.997452
340	14		85		0.993533
341	85			14	0.993533
521			88	11	0.923564
522	88			11	0.923564
546		80		20	0.995493
1420		20		80	0.999996
1497	86			13	0.999973
1498		13	86		0.999973
1499	13		86		0.999973
1673		88		11	0.923564
1674	88	11			0.923564
1675	88		11		0.923564
1789	25	75			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1051	1064	CAT CAT CAT CAT CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain