SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14118

Length: 2856 nt

UniGene Fasta

>sp_v3.0_unigene14118
ATGGGGGAATGTTAACCGCCTCCCCAAACGTGAGAGAGAAAGAGTGACGATCATTGATACACAGTGCGATTGATAGAGGTAGACAATCAAACCAAGCTTTTACAATGCTCCCATGGCCCAGCCTATACATGGAATTTACCAGACGCCTATTAAAACAAAAAATCCACCTATATCAGAAGGACTATTAAATTGATCTTACCAGGCTGGATTATTATATTGCTCGTGCCATTAATTCGTCTCCTTTCACGAGATTTCCACCTAAATCTCTACACGAACCTACCATGTCCCTGGGATTCTTCATTTACTACTGGACTGCAACCGACTCATTCGACTTGATTTGTATTATTAGCTACCTCCCGAAAGGAAGTTTTACAATTGCGGGATAGGGTTAATCTTTTATAGTTGGTTCGGTGAGAGTGGGGATTGTTGAAAGAAATGGTGGTCACATGCATCTTCTGGTTATGGTCGTAAGGTAAGGGTCACTCTTAAATCGAAACGTGAAGGAAAGAGACTGAAAGCTAGGAATGAATTCAGAAAGGGCATCAATGCTGATACCTCTCATTTTGATGAGCATTTCCCTTTGTGCTGTTTCATTTTATCTTGGTGGCTTATTTTTCTCAGAGAAAGAGAAATTAATGCTCTTGGAAAATGGAACATCACATCCATCTCTAAAAGCAGACTGTGCAGTGGCCGAAGTCAAACCTGTGGCATTTAATGAATGCAGCATTGAGTATCAAGATTACACTCCCTGCACAGACCCAAAGAGATGGAAAATATATGATCACCATCGATTTGCATTTCTAGAACGCCACTGTCCTTCACCATCCAAAAGAGTTGAATGCTTAATCCCTCCTCCAGAGGGCTATAAGATACCCATCAGATGGCCTCGCAGCAGGGGATGAGTGTTGGTACAGGAATGTCCCCTATGAATGGATTAATACTGTAAAATCAAATCAAAACTGGCTAAAGAAGAAAGGGGAAAAGTTCCTTTTTCCAGGTGGAGGGACAATGTTTCCCAGGGGTGTTAATGAATACCTTGATTTAATGGAAGAGCTTATTCCTGGAATGAAAGATGGCAGTGTTAGAACAGCGCTTGATACTGGATGTGGGGTTGCAAGCTGGGGTGGCTACCTACTGGATCGTGGAATCTTATCCATATCACTGGCACCCAGAGATAACCATGAAGCTCAAGTGCAATTTGCCCTTGAACGTGGAATTCCTGCAATGTTGGGCATCATAGCTACACAGAGGTTGCCTTACCCCTCCAGTGCATTCGACATGGCTCACTGTTCACGGTGTCTTATTCCTTGGACAGATTTTGGTGGAGTTTACCTATTGGAAATTGATAGAGTATTGAGACCAGGAGGATTCTGGGTGTTGTCTGGCCCACCAATAAATTATGAAAACCGTTGGCGAGGTTGGAACACAACCATAGAAGAGCAGAAGGCCAGTTTTGATTCCCTCCAAAATCTTCTGACCAATATGTGTTACAAGCTGTACAAGAAGAAGGATAATATTGCTGTGTGGCAGAAACCAATGGATAATATGTGCTATGATAGCCGTGGAGAGACAGCATATCCTCCCAAATGTGATGGCAGTCTAGAGCCAGATGCAGCATGGTATGTTCCTTTGAGGCCATGTATTGTGACTCTTAATCTTTTCTTAAAGAGACTGGGTGTAGGGCAGACTCCTAAGTGGCCAGAGCGTCTAAATGTTCCCCCAGAACGAGTTCGCGCAGTGTCTGGGGGTAATGCACATGCATTTAAAAAGGATACAGCCAAATGGATGGATCGAGTTAAGTACTACAAGACTTTGCTCCCTGAGCTTGGAAGAGACACAATAAGGAATGTGATGGATATGAACACTCTTTATGGAGGTTTTGCTGCGGCATTAATAGATGATCCTGTCTGGGTCATGAATGTGGTCTCAACCTATAGTCCGAATTCTTTAAGCGTGATCTATGATCGAGGCTTAATTGGTACATTCAATGACTGGTGTCAGGCGTTTTCGACCTATCCTAGAACCTATGATTTGCTGCATCTAGACGGCCTTTTCACTGCTGAAAGTCACAGATGTGAGATGAAATTTGTGCTGCTGGAAATGGATAGAATGCTTCGTCCAAATGGCTATGTCATCATGCACGATTCTTCTTATTTTGTGAATAGAACATTAATTCTCGCCTCTGCCATGAGATGGGATTGCAGGACAGAGGACAGTAAAGGTCTTAAAGGAAAGCTTATGATATGTCAGAAGAAGTTTTGGCAATCCTCCAAACTGTAACAGCACAACGAAGGAGCTGTTGTCTACCCTCCTATTTGGCATGTGAGTCTATATGCAAAATTACAAGAAAATGATCATCTACATCATATGAAAGGGTATTCAGATTTGGTATTGTCTATTTTGTATGTTATTTCAAATGATTTTCCCACCAGGTGGTGCATCGAGGTTCAACTTCTGAAGAGATGGGCTACTCCTGTTTTTTTGGTAATCTGTGACTTAGTACTTATTATTTTTATTGGCTTCGTGACTATTACACAGTACCAGTCAGTTGTATGGAGAGCCTGGAAACAGCTTTCTAAGTATACGTTATCATTCGCACGAGTTGAATACCTTAAAGGCACAATGGAGACTCACAATGAAATGAAAATGCTCATAAAAAATTTACATGCTATCCTCCGGCATCTGATAAGATTGTATTTGATGGTATTTTGAATTGATTAATAATTTGTCTATGGTGTTACCTTTTGCCAATCAGGGTGTTACCATTTGTCAGGGTTGCGGGTAGGCATGATGTTGCGGAGCTGTCATGCTGCTACCTTGAATTAGAGCTTTTGAAATCACTTCAGTGGTTGGCCG

Ace file of the UniGene sp_v3.0_unigene14118

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative methyltransferase PMT20 [Arabidopsis thaliana] ref\|NP_849736.1\| putative methyltransferase PMT20 [Arabidopsis thaliana] ref\|NP_973949.1\| putative methyltransferase PMT20 [Arabidopsis thaliana] sp\|Q9C6S7.1\|PMTK_ARATH RecName: Full=Probable methylt	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	ATP binding protein, putative	-	-	7.909e-20	-

Source	Gene names
Sma3	AT1G26850; AT1G31850; AT4G18030; AT4G19120; AT4g00740; AT4g00750; AT4g10440; AT4g14360; AT4g18030; AT4g19120; At1g04430; At1g04430/F19P19.11; At1g26850; At1g29470; At1g31850; At1g33170; At1g77260; At2g34300; At2g39750; At2g40280; At2g43143; At2g43200; At2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31850.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr1:11431165-11433443 FORWARD LENGTH=603	69%
RefSeq	Arabidopsis thaliana	NP_849736.1	putative methyltransferase PMT20 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002326766.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMQ4

Fln msg: Separated hits, possible frame ERROR between 896 and 898, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 586 - 626

Fln protein: MNSERASMLIPLILMSISLCAVSFYLGGLFFSEKEKLMLLENGTSHPSLKADCAVAEVKPVAFNECSIEYQDYTPCTDPKRWKIYDHHRFAFLERHCPSPSKRVECLIPPPEGYKIPIRWPRSxxDECWYRNVPYEWINTVKSNQNWLKKKGEKFLFPGGGTMFPRGVNEYLDLMEELIPGMKDGSVRTALDTGCGVASWGGYLLDRGILSISLAPRDNHEAQVQFALERGIPAMLGIIATQRLPYPSSAFDMAHCSRCLIPWTDFGGVYLLEIDRVLRPGGFWVLSGPPINYENRWRGWNTTIEEQKASFDSLQNLLTNMCYKLYKKKDNIAVWQKPMDNMCYDSRGETAYPPKCDGSLEPDAAWYVPLRPCIVTLNLFLKRLGVGQTPKWPERLNVPPERVRAVSGGNAHAFKKDTAKWMDRVKYYKTLLPELGRDTIRNVMDMNTLYGGFAAALIDDPVWVMNVVSTYSPNSLSVIYDRGLIGTFNDWCQAFSTYPRTYDLLHLDGLFTAESHRCEMKFVLLEMDRMLRPNGYVIMHDSSYFVNRTLILASAMRWDCRTEDSKGLKGKLMICQKKFWQSSKL*

Protein Length: 587

Fln nts: ATGGGGGAATGTTAACCGCCTCCCCAAACGTGAGAGAGAAAGAGTGACGATCATTGATACACAGTGCGATTGATAGAGGTAGACAATCAAACCAAGCTTTTACAATGCTCCCATGGCCCAGCCTATACATGGAATTTACCAGACGCCTATTAAAACAAAAAATCCACCTATATCAGAAGGACTATTAAATTGATCTTACCAGGCTGGATTATTATATTGCTCGTGCCATTAATTCGTCTCCTTTCACGAGATTTCCACCTAAATCTCTACACGAACCTACCATGTCCCTGGGATTCTTCATTTACTACTGGACTGCAACCGACTCATTCGACTTGATTTGTATTATTAGCTACCTCCCGAAAGGAAGTTTTACAATTGCGGGATAGGGTTAATCTTTTATAGTTGGTTCGGTGAGAGTGGGGATTGTTGAAAGAAATGGTGGTCACATGCATCTTCTGGTTATGGTCGTAAGGTAAGGGTCACTCTTAAATCGAAACGTGAAGGAAAGAGACTGAAAGCTAGGA_-_ATGAATTCAGAAAGGGCATCAATGCTGATACCTCTCATTTTGATGAGCATTTCCCTTTGTGCTGTTTCATTTTATCTTGGTGGCTTATTTTTCTCAGAGAAAGAGAAATTAATGCTCTTGGAAAATGGAACATCACATCCATCTCTAAAAGCAGACTGTGCAGTGGCCGAAGTCAAACCTGTGGCATTTAATGAATGCAGCATTGAGTATCAAGATTACACTCCCTGCACAGACCCAAAGAGATGGAAAATATATGATCACCATCGATTTGCATTTCTAGAACGCCACTGTCCTTCACCATCCAAAAGAGTTGAATGCTTAATCCCTCCTCCAGAGGGCTATAAGATACCCATCAGATGGCCTCGCAGCAGxxxGGATGAGTGTTGGTACAGGAATGTCCCCTATGAATGGATTAATACTGTAAAATCAAATCAAAACTGGCTAAAGAAGAAAGGGGAAAAGTTCCTTTTTCCAGGTGGAGGGACAATGTTTCCCAGGGGTGTTAATGAATACCTTGATTTAATGGAAGAGCTTATTCCTGGAATGAAAGATGGCAGTGTTAGAACAGCGCTTGATACTGGATGTGGGGTTGCAAGCTGGGGTGGCTACCTACTGGATCGTGGAATCTTATCCATATCACTGGCACCCAGAGATAACCATGAAGCTCAAGTGCAATTTGCCCTTGAACGTGGAATTCCTGCAATGTTGGGCATCATAGCTACACAGAGGTTGCCTTACCCCTCCAGTGCATTCGACATGGCTCACTGTTCACGGTGTCTTATTCCTTGGACAGATTTTGGTGGAGTTTACCTATTGGAAATTGATAGAGTATTGAGACCAGGAGGATTCTGGGTGTTGTCTGGCCCACCAATAAATTATGAAAACCGTTGGCGAGGTTGGAACACAACCATAGAAGAGCAGAAGGCCAGTTTTGATTCCCTCCAAAATCTTCTGACCAATATGTGTTACAAGCTGTACAAGAAGAAGGATAATATTGCTGTGTGGCAGAAACCAATGGATAATATGTGCTATGATAGCCGTGGAGAGACAGCATATCCTCCCAAATGTGATGGCAGTCTAGAGCCAGATGCAGCATGGTATGTTCCTTTGAGGCCATGTATTGTGACTCTTAATCTTTTCTTAAAGAGACTGGGTGTAGGGCAGACTCCTAAGTGGCCAGAGCGTCTAAATGTTCCCCCAGAACGAGTTCGCGCAGTGTCTGGGGGTAATGCACATGCATTTAAAAAGGATACAGCCAAATGGATGGATCGAGTTAAGTACTACAAGACTTTGCTCCCTGAGCTTGGAAGAGACACAATAAGGAATGTGATGGATATGAACACTCTTTATGGAGGTTTTGCTGCGGCATTAATAGATGATCCTGTCTGGGTCATGAATGTGGTCTCAACCTATAGTCCGAATTCTTTAAGCGTGATCTATGATCGAGGCTTAATTGGTACATTCAATGACTGGTGTCAGGCGTTTTCGACCTATCCTAGAACCTATGATTTGCTGCATCTAGACGGCCTTTTCACTGCTGAAAGTCACAGATGTGAGATGAAATTTGTGCTGCTGGAAATGGATAGAATGCTTCGTCCAAATGGCTATGTCATCATGCACGATTCTTCTTATTTTGTGAATAGAACATTAATTCTCGCCTCTGCCATGAGATGGGATTGCAGGACAGAGGACAGTAAAGGTCTTAAAGGAAAGCTTATGATATGTCAGAAGAAGTTTTGGCAATCCTCCAAACTGTAA___CAGCACAACGAAGGAGCTGTTGTCTACCCTCCTATTTGGCATGTGAGTCTATATGCAAAATTACAAGAAAATGATCATCTACATCATATGAAAGGGTATTCAGATTTGGTATTGTCTATTTTGTATGTTATTTCAAATGATTTTCCCACCAGGTGGTGCATCGAGGTTCAACTTCTGAAGAGATGGGCTACTCCTGTTTTTTTGGTAATCTGTGACTTAGTACTTATTATTTTTATTGGCTTCGTGACTATTACACAGTACCAGTCAGTTGTATGGAGAGCCTGGAAACAGCTTTCTAAGTATACGTTATCATTCGCACGAGTTGAATACCTTAAAGGCACAATGGAGACTCACAATGAAATGAAAATGCTCATAAAAAATTTACATGCTATCCTCCGGCATCTGATAAGATTGTATTTGATGGTATTTTGAATTGATTAATAATTTGTCTATGGTGTTACCTTTTGCCAATCAGGGTGTTACCATTTGTCAGGGTTGCGGGTAGGCATGATGTTGCGGAGCTGTCATGCTGCTACCTTGAATTAGAGCTTTTGAAATCACTTCAGTGGTTGGCCG

Fln Alignment:

Contig14118___VAFNECSIEYQDYTPCTDPKRWKIYDHHRFAFLERHCPSPSKRVECLIPPPEGYKIPIRWPRSRxDECWYRNVPYEWINTVKSNQNWLKKKGEKFLFPGGGTMFPRGVNEYLDLMEELIPGMKDGSVRTALDTGCGVASWGGYLLDRGILSISLAPRDNHEAQVQFALERGIPAMLGIIATQRLPYPSSAFDMAHCSRCLIPWTDFGGVYLLEIDRVLRPGGFWVLSGPPINYENRWRGWNTTIEEQKASFDSLQNLLTNMCYKLYKKKDNIAVWQKPMDNM-CYDSRGETAYPPKCDGSLEPDAAWYVPLRPCIVTLNLF--LKRLGVGQTPKWPERLNVPPERVR--AVSGGNAHAFKKDTAKWMDRVKYYKTLLPELGRDTIRNVMDMNTLYGGFAAALIDDPVWVMNVV-STYSPNSLSVIYDRGLIGTFNDWCQAFSTYPRTYDLLHLDGLFTAESHRCEMKFVLLEMDRMLRPNGYVIMHDSSYFVNRTLILASAMRWDCRTEDSKG---LKGKLMICQKKFW
B8LMQ4_______________INFESCDIKYSEYTPCQDPDRARKFDRTKLIYRERHCPDKKEALKCLIPAPPGYKNPFRWPKSRxDYAWFANVPHRELTIEKAVQNWIQVEDDKFRFPGGGTMFTRGADAYIDDIDKLIP-LTDGSIRTAIDTGCGVASWGAYLLKRNILTMSFAPRDTHEAQVQFALERGVPAMIGIMASQRIPYPARAFDMAHCSRCLIPWKDYDGVYLIEVDRVLRPGGYWILSGPPVNWKKYHRGWERTPEDLKQEQDAIEDVAKRLCWKKVVEKGDLAIWQKPMNHIDCVKSRNIYKVPHICKND-NPDAAWYRKMETCITPLPEVNDINAVAGGALEKWPKRVTAVPPRIRSGSIPGITAENFNEDSKLWTDRVANYKRLIGQLGQGRYRNIMDMNAGLGGFAAALANDPVWVMNVVPSDAKHNTLGVIYERGFIGTYQDWCEAFSTYPRTYDLIHASGLLSMYQDRCEISDILLEMDRILRPEGTVIFRDTVDVLVKVENLIGGMRWQSQMMDHESGPFNQEKILIAVKQYW

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
296	33	66			0.997452
299			33	66	0.997452
300		66	33		0.997452
399		50		50	1.0
400	50		50		1.0
402	50	50			1.0
406	50			50	1.0
407		50	50		1.0
408		50	50		1.0
411		50	50		1.0
413		50	50		1.0
416	50			50	1.0
417		50	50		1.0
419		50	50		1.0
422	50		50		1.0
705		80		20	0.995493
729	80			20	0.995493
891	25	75			0.996473
1168	14		85		0.993533
1318		20	80		0.995493
1350		25		75	0.996473
1474		87	12		0.992554
1475			12	87	0.992554
1476			12	87	0.992554
1717	22		77		0.999999
1737		90		10	0.90298
1806		90		10	0.90298
1807			10	90	0.90298
1808	90		10		0.90298
1852	10		90		0.90298
1853		10		90	0.90298
1854	10		90		0.90298
1855	90			10	0.90298
1885	11		88		0.923564
1956		87		12	0.992554
2229	14		7	78	0.999974
2294	87			12	0.999964
2307		86		13	0.999973
2513	45	54			1.0
2622	18		81		0.999994
2678	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain