SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14103

Length: 1195 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14103

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dynamin central region; Dynamin [Medicago truncatula]	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Dynamin, putative	-	-	1.975e-24	-

Source	Gene names
Sma3	ADL1; ADL1A; ADL1B; ADL1C; ADL1D; ADL1E; ADL2; ADL2A; ADL2B; ADL4; ADL5; AG68; At1g14830; At2g14120; At2g44590; At3g60190; At3g61760; At4g33650; At5g42080; B1130E07.11; B1331F11.31; B1793G04.8-1; CHLREDRAFT_195430; CHLREDRAFT_195431; DLP1; DLP2; DLP3; DRP

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell cortex	GO:0005938	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	branched-chain-amino-acid transaminase activity	GO:0004084	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	phosphatidylinositol binding	GO:0035091	Molecular Function	-
Sma3	mitochondrial fission	GO:0000266	Biological Process	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3	pollen maturation	GO:0010152	Biological Process	-
Sma3	peroxisome fission	GO:0016559	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	G-patch domain	IPR000467	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33650.2	DRP3A dynamin-related protein 3A chr4:16161073-16166587 FORWARD LENGTH=809	66%
RefSeq	Arabidopsis thaliana	NP_567931.1	dynamin-related protein 3A [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002327916.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS11

Fln msg: Distance to subject end: 281 aas, your sequence is shorter than subject: 337 - 615

Fln protein: MAEDSNASPGFGQSLIPVINKLQDIFAQLGSGSTIDLPQVAVVGSQSSGKSSVLEALVGRDFLPRGSNICTRRPLVLQLVQVPQPAEEWEYVEWGEFLHLPGRTFTDFSAIEGEIQAETEREVGANMGISDKPIRLKIFSPYVLNITLVDLPGITKVPVGDQPADIEARIRTMVMSYITNPSCIILAVSPANSDLANSDALQIARIADIDGSRTIGVITKLDIMDRGTDASNLLLGNVIPLRLGYIGVVNRSQEDIIANKSIRDALASEEKYFHSCQVYHSLSEHCGIPQLAKKLNQVLEKHIRQLLPYLKAQIYAQMTSVKKELSSYGEITETETR

Protein Length: 338

Fln nts: ATCAAACGAGTAACTACCGAGAAAAAATTCCAGAGAACAGAATCCAGAAAACACCAATGAAATATTGATTGAGGGCTGCTTGTTATATCCTCATAAATCACGGCCTCTTCGATCTACCGCATCGGCAAACCCCGATTGAGAATCTTCTTATCTACGCGGTGAGATTCGAAGTCGCGACGCATT_-_ATGGCCGAGGATAGCAACGCAAGCCCTGGTTTCGGTCAGTCGTTAATCCCTGTGATAAACAAGCTGCAGGACATATTTGCGCAATTGGGCAGCGGTTCCACGATCGATCTCCCGCAGGTCGCTGTGGTCGGAAGTCAAAGTAGCGGGAAGTCCAGCGTCCTCGAAGCTCTGGTTGGCCGGGATTTTCTTCCCCGGGGATCGAATATCTGCACTCGCCGGCCTCTTGTTCTACAGCTTGTTCAAGTCCCTCAGCCGGCCGAGGAGTGGGAATATGTCGAGTGGGGAGAGTTCTTGCATCTTCCCGGTCGGACATTCACCGACTTTTCGGCCATTGAGGGTGAAATTCAGGCTGAAACAGAGAGGGAAGTTGGAGCCAACATGGGCATCTCGGATAAGCCTATTCGATTGAAAATATTTTCTCCATATGTCCTGAACATTACTCTGGTGGACTTGCCTGGTATAACAAAGGTTCCAGTTGGTGATCAACCGGCAGACATTGAGGCTCGCATTAGAACAATGGTTATGTCATACATTACGAATCCTTCTTGTATTATCCTGGCAGTCTCTCCGGCTAACTCCGATTTGGCCAATTCAGACGCCCTTCAAATTGCCAGGATAGCTGACATTGATGGATCTCGTACAATAGGTGTGATTACAAAGCTGGATATTATGGACAGAGGAACTGATGCTTCTAATTTACTTCTTGGAAATGTGATCCCACTTCGGCTTGGCTACATTGGGGTTGTTAATCGAAGTCAAGAGGACATTATTGCAAACAAAAGCATACGAGATGCACTTGCGTCAGAGGAGAAATATTTTCACAGTTGTCAGGTATACCACAGTCTATCTGAACACTGTGGTATTCCCCAATTAGCAAAGAAATTGAATCAGGTTTTAGAAAAGCACATCAGACAGTTGCTACCATATCTGAAAGCCCAAATATATGCTCAAATGACCAGTGTCAAAAAGGAGCTTTCTTCGTATGGAGAGATTACAGAAACTGAAACTCGGC

Fln Alignment:

Contig14103___QSLIPVINKLQDIFAQLGS----GSTI------DLPXXXXXXXXXXXXXXXLEALVGRDFLPRGSNICTRRXXXXXXXXXXXXAEEWEYVEWGEFLHLPGRTFTDFSAIEGEIQAETEREVGANMGISDKPIRLKIFSPYVLNITLVDLPGITKVPVGDQPADIEARIRTMVMSYITNPSCIILAVSPANSDLANSDALQIARIADIDGSRTIGVITKLDIMDRGTDASNLLLGNVIPLRLGYIGVVNRSQEDIIANKSIRDALASEEKYFHSCQVYHSLSEHCGIPQLAKKLNQVLEKHIRQLLPYLKAQIYAQMTSVKKELSSYG
B8LS11_______________ENLIGLVNRIQRACTVLGDYGGEGASALPTLWESLPTVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDDGSPDY-----AEFLHLPNKRFTDFARVRNEIQEETDRVTGRSKMISPVPIHLSIYSSNVVNLTLVDLPGLTKVAVEGQPESIVGDIENMVRSYVDKPNCLILAISPANQDIATSDAIKLAREVDPSGDRTFGVLTKLDLMDKGTNAIDVLDGRAYRLQHPWVGVANRSQADINKSVDMIAARRKEREYFATSPDYGHLSSRMGSEYLAKLLSKQLESAIKSRIPSILSLINKTIDELESEMNHLG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
847	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain