SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14099

Length: 3945 nt

UniGene Fasta

>sp_v3.0_unigene14099
CGTCGTGACCTTGGATGGCACCCACTCTTTTAGCGGTTATTTCCCGAATTAGAGTTTTGGAAAAGGATTAGGGTTTCGGCACCCGAAAGCCCCCGAATCTAGGTCTCTGGCTGCTGGTCACATTGCAATCCGATTGCAAAACTTTTACTTTAGTGCACTCCATTGATTTATATCAGCTAGTTGGAGAAATCACTTTTGCGGGTATTAATCAGGGAGGCATTTACGTAGCTCCAAATGGAGTCCCACGAACTTTTTGAAGATCATGGGCATTTTGGGACAGTGTCGATGTTAGAAGCGCATGAATGCAGGTTGAAGGATATTGAGAAAATGAAGCAAGATGCAGATGTAGATTTTGATCCTAGTGCACCATACTCTTCTTCAATGGATAATGTGCCATTAAAGGTTCTATTTGGAGTACCTAACGTAAAGATGCGTCAATCTCCAACACAGGAGAAGAAGACAGCACAGACAGATTTATCTTCTCCCAAGGGTCATGTTGATTCATCTGACTCAGTCAGAGCCAAACTCAGAGAATCATTGGCATCTGCTTTGGCTATGGTATGGGATGAACAATCTAAAAGGGATGTAAAAATGGAAAATAATTTCCAGATTGAATCAACACTCTTGAACAAGGATGGGAGCATGGATTATAATGTTGTTAAAATGGAAGACCCCGAGTTGAGTGCCATGACTGACAAATATTGTCAAGAGGAATCATCTGGAACTTTGAAGCGAGGTAGGGAAGATTTTGAACAGAATCAGGTTTTGGCAGAAACAACAGTTTCGTCATGTTGCTTAAGACAAGGTTCACACCTGGAACAAAATGAAATTCAGATTAACTCTGAGTTAAATGTACCATACAATGGCGAGGCAGAGACAATAATGTTTAAAAGGGCTAAATTAGAGAAAGAGGAGAGTCAAAGTGAAGGGCATGAACAAACTATGCAGAGTTCTGAATTAGCACAGATTGTATCAGTTAAAGTCGAAGCTGAACTTTTTAGAATATATGGCAGTGTTAACAAGAAGTACAAGGAAAAGGCCAGGTCTCTTCTCTTTAATCTTAAAGATAGAAACAACCCTGAGTTAAGGGCACGTGTTGTATCAGGTGAAATCACTCCTGAGCGCCTCTGTTGCATGACTGCAGAACAATTAGCGTCCAAGGAATTGTCGCAATGGAGGATTGCCAAAGCAGAGGAGCTTGCTTATATGATAGTTCTACCTGACTCAGATGTTGACTATAGAAGGTTAGTGAAGAAAACACACAAAGGAGAATTCCATTTGGAAGTTGAAAAGGATGAAGTAGCTCCAGAAGTAGCGGCTGGTGGAGGACAGCAACTCCAAACTAAGCAGGAGCATACTGAAAGCAATGAAGCCTCAGATGTGGATGAAGTTGCTGGTGTAGTTGATAGTCTTGACCATAATGAAATTGGCAGTGGTTCAGATTCCCCTGGTTCTTTTCCATCGTGTACGTTATCTGGTCAAGTAGTTGGAATAGATGCATCAGACATGAGTCCAGCTGAAATTGTTACTGAAGAGGTAATGAGGGAACGAAAGGAACTTCCAGAAATAATGTCTCTTGATGAATATATAGGTTCAAGGGAAGACCAATCTAATGAAGACGCAGAAGTTGTTAACACAATTCAGAATGAAGAATCTACAGAATGGGCAAACACCCTTCAAGGTAACTTGGAAGAAGGCAAAGCTAGTGTATTAGATAATCTTTCTGTCGCCCGCAAGAGAATGCTCATTGGAGAAGGACAAAGTGAAAGCCGGAGCAGGAAAACTAAATATTCAGATGGTTTGAATGAGTGGCAAGGAAATGCAGCTCAGTCTTCATCTTATGAAATACTTTGGGAGGGAACTGTACAATTAAATCCATTTGTTGTTGAAACAGTCGTGGCTGTTTTCAAAAGTGGTGAGAAAACCTCAGCGAAAGACTGGTCTAAGTATGTCGAAGTTAAGGGAAGAGTACGACTAGATGCATTTGAAAAGTTTCTTCAGGAGTTACCTCTTTCTCGAAGTCGTACAGTCATGGTGGTTTCAATTTGTTGCAAGGATGGATCCTCAGAGAATGGTCCGGCAAGCATTCAGGAGGTTGCCGATTCTTATAAGCAAGGGGAGAGAGTAGGATATGCAGAACCTGCTCCGGGAGTTGAGCTGTACCTATGCCCCACTGATGTTATTACAATGAAAGTTCTCAATAAATATGTTACACACGAAGATTTTGAGAATATAAATGAGCAGAATGGTTTGATTGGATGTGTTGTGTGGCGAAGAAATAATGTAACCTCTAATATTATGCATAAGATGCCAGAACAACAATATATAAATGCTAAAAAGCTTGCACTATCTGGTCATTTGCTGGATTCTCCAACGCGTCCTGGTGTCTTAGATTCGGTGCCATATGGAACTGACAGCCCAAATTATGTGATTAATTCTAGCCTTGAAAACCATTCTGTTCAAAGTAGATCACCGACTATGAAATCTGCACTAAATACTACATTACTTGAAAATATTACATCTGAAGATAAAGATGCTTCAGAAACTGATATTCCACCTGGATTTGGTTCCTGGCCATCTGGTGATCAACAAATAAATGTACCCAAGATTATTGAATCGTCTGATATGAATGATGATTTGAATGATGATGTGCCCCCAGGATTTGGGCCCACAGCAGCATTTAGTGTAAATGGTGGCTATACTCAAAATTTGGATGACGATGATCTTCCGGAATTTGATTATGGAGTGTCTGTACCCTATCAACGTCAAATACCCCCATCTGATCAGTTGCCTCCAGAAGTTTGTAGCCTGCAGTCCTTGTCTTCTACCAAGTCTCCAAGCCAATCATCTCAGCCTCAAGTATCAATTTCTAATCAAGGCTACTTTCAGTCCAATGTAAATTTGCACTCACCTCAAGTCCTATCAGTAGGTCACCAAGTTGTGCAGCAGGTTCCAAGGCCACCAACCACTCCTCACCCATCAATGAAAATCCGCGAGTTGATACAAAAGTTTGGACAGAGTGATGCCGCATTCTCCTCTGGACCTAATTCTGCCCCTGATGTTAACGGGGTTCATATTGCCACCCAAATAGGTCAGCAGGCAGGTCCTAGCGCTTCTCAAGTTCCTATCAATGCTCATAATCTAATGCCTGAAAATAATGCATGGAATGACGAGGATGATATTCCTGAATGGCGTCCTCCATATTTTTCGCAAGGAAATAGTTCTTTGGTGGTTCCCCCAATGGAGTCTATGCCACCATCTCAGTTGGGGGTGCCAAATTTGATAGGAAATTTACAGCCAGTACATCCTTTGCCTCCAAGAGCAGCTCCACCCCAACGATGCCCACAACAAATGCCTCCACCACAAAGATGTCCTCAACAAATGCCTCCACCACAAAGAGGGCCTCCCCATATGTTGCCACCACAGGCTCTTATGCCGCAGTGTTTGCCACCTCCTTTACCACAAGGCCCTCGACCTTTAACTGGTATGGTTCGGCCAGTTCCCATGATGACACAAAGGGGACCTGGATTTGTATATGCAAATAATTCTCCGTCATTTCATACTAGCCACAATTTCAGGCCTGCCTTAAGCGGGCCAGACATCAGACCTCTTGATGCAAGGAATAGAATGATATGAATCTGTCCGGTGGGATGAGTGCCACTGTGTAGTTGGAAAGTTTCATTGTATAACTAGTACTTGCATCCCTCCATTTCAAGGATGCTTGTACAAATATCGTGCAACTTCAAGTTATGCCATGTACATTATAATTATTGGCCCAGTAAATGCAGCCTACATGTAACATTATTGTGGCATAACTATTCTGTTTGTGTTCATTATTGTAATGTGAACTTAAATATAATGAAGAACGATGTGGTGATTGTAATAGGTAATATAACAAAGGAAACAGTAACACCTAATAGGAAGGCCTCTTTTTGAGACGACATT

Ace file of the UniGene sp_v3.0_unigene14099

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[K] COG1594 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS	-	-	2.0e-09	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%

Source	Gene names
Sma3	VITISV_043189;

Source	GOs	Term	Type	e value	Identity
Sma3		GO:0006350	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription elongation factor S-II, central domain	IPR003618	-	0.0	-
Sma3	Spen paralogue and orthologue SPOC, C-terminal	IPR012921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT74

Fln msg: your sequence is longer than subject: 1134 - 328

Fln protein: MESHELFEDHGHFGTVSMLEAHECRLKDIEKMKQDADVDFDPSAPYSSSMDNVPLKVLFGVPNVKMRQSPTQEKKTAQTDLSSPKGHVDSSDSVRAKLRESLASALAMVWDEQSKRDVKMENNFQIESTLLNKDGSMDYNVVKMEDPELSAMTDKYCQEESSGTLKRGREDFEQNQVLAETTVSSCCLRQGSHLEQNEIQINSELNVPYNGEAETIMFKRAKLEKEESQSEGHEQTMQSSELAQIVSVKVEAELFRIYGSVNKKYKEKARSLLFNLKDRNNPELRARVVSGEITPERLCCMTAEQLASKELSQWRIAKAEELAYMIVLPDSDVDYRRLVKKTHKGEFHLEVEKDEVAPEVAAGGGQQLQTKQEHTESNEASDVDEVAGVVDSLDHNEIGSGSDSPGSFPSCTLSGQVVGIDASDMSPAEIVTEEVMRERKELPEIMSLDEYIGSREDQSNEDAEVVNTIQNEESTEWANTLQGNLEEGKASVLDNLSVARKRMLIGEGQSESRSRKTKYSDGLNEWQGNAAQSSSYEILWEGTVQLNPFVVETVVAVFKSGEKTSAKDWSKYVEVKGRVRLDAFEKFLQELPLSRSRTVMVVSICCKDGSSENGPASIQEVADSYKQGERVGYAEPAPGVELYLCPTDVITMKVLNKYVTHEDFENINEQNGLIGCVVWRRNNVTSNIMHKMPEQQYINAKKLALSGHLLDSPTRPGVLDSVPYGTDSPNYVINSSLENHSVQSRSPTMKSALNTTLLENITSEDKDASETDIPPGFGSWPSGDQQINVPKIIESSDMNDDLNDDVPPGFGPTAAFSVNGGYTQNLDDDDLPEFDYGVSVPYQRQIPPSDQLPPEVCSLQSLSSTKSPSQSSQPQVSISNQGYFQSNVNLHSPQVLSVGHQVVQQVPRPPTTPHPSMKIRELIQKFGQSDAAFSSGPNSAPDVNGVHIATQIGQQAGPSASQVPINAHNLMPENNAWNDEDDIPEWRPPYFSQGNSSLVVPPMESMPPSQLGVPNLIGNLQPVHPLPPRAAPPQRCPQQMPPPQRCPQQMPPPQRGPPHMLPPQALMPQCLPPPLPQGPRPLTGMVRPVPMMTQRGPGFVYANNSPSFHTSHNFRPALSGPDIRPLDARNRMI*

Protein Length: 1135

Fln nts: CGTCGTGACCTTGGATGGCACCCACTCTTTTAGCGGTTATTTCCCGAATTAGAGTTTTGGAAAAGGATTAGGGTTTCGGCACCCGAAAGCCCCCGAATCTAGGTCTCTGGCTGCTGGTCACATTGCAATCCGATTGCAAAACTTTTACTTTAGTGCACTCCATTGATTTATATCAGCTAGTTGGAGAAATCACTTTTGCGGGTATTAATCAGGGAGGCATTTACGTAGCTCCAA_-_ATGGAGTCCCACGAACTTTTTGAAGATCATGGGCATTTTGGGACAGTGTCGATGTTAGAAGCGCATGAATGCAGGTTGAAGGATATTGAGAAAATGAAGCAAGATGCAGATGTAGATTTTGATCCTAGTGCACCATACTCTTCTTCAATGGATAATGTGCCATTAAAGGTTCTATTTGGAGTACCTAACGTAAAGATGCGTCAATCTCCAACACAGGAGAAGAAGACAGCACAGACAGATTTATCTTCTCCCAAGGGTCATGTTGATTCATCTGACTCAGTCAGAGCCAAACTCAGAGAATCATTGGCATCTGCTTTGGCTATGGTATGGGATGAACAATCTAAAAGGGATGTAAAAATGGAAAATAATTTCCAGATTGAATCAACACTCTTGAACAAGGATGGGAGCATGGATTATAATGTTGTTAAAATGGAAGACCCCGAGTTGAGTGCCATGACTGACAAATATTGTCAAGAGGAATCATCTGGAACTTTGAAGCGAGGTAGGGAAGATTTTGAACAGAATCAGGTTTTGGCAGAAACAACAGTTTCGTCATGTTGCTTAAGACAAGGTTCACACCTGGAACAAAATGAAATTCAGATTAACTCTGAGTTAAATGTACCATACAATGGCGAGGCAGAGACAATAATGTTTAAAAGGGCTAAATTAGAGAAAGAGGAGAGTCAAAGTGAAGGGCATGAACAAACTATGCAGAGTTCTGAATTAGCACAGATTGTATCAGTTAAAGTCGAAGCTGAACTTTTTAGAATATATGGCAGTGTTAACAAGAAGTACAAGGAAAAGGCCAGGTCTCTTCTCTTTAATCTTAAAGATAGAAACAACCCTGAGTTAAGGGCACGTGTTGTATCAGGTGAAATCACTCCTGAGCGCCTCTGTTGCATGACTGCAGAACAATTAGCGTCCAAGGAATTGTCGCAATGGAGGATTGCCAAAGCAGAGGAGCTTGCTTATATGATAGTTCTACCTGACTCAGATGTTGACTATAGAAGGTTAGTGAAGAAAACACACAAAGGAGAATTCCATTTGGAAGTTGAAAAGGATGAAGTAGCTCCAGAAGTAGCGGCTGGTGGAGGACAGCAACTCCAAACTAAGCAGGAGCATACTGAAAGCAATGAAGCCTCAGATGTGGATGAAGTTGCTGGTGTAGTTGATAGTCTTGACCATAATGAAATTGGCAGTGGTTCAGATTCCCCTGGTTCTTTTCCATCGTGTACGTTATCTGGTCAAGTAGTTGGAATAGATGCATCAGACATGAGTCCAGCTGAAATTGTTACTGAAGAGGTAATGAGGGAACGAAAGGAACTTCCAGAAATAATGTCTCTTGATGAATATATAGGTTCAAGGGAAGACCAATCTAATGAAGACGCAGAAGTTGTTAACACAATTCAGAATGAAGAATCTACAGAATGGGCAAACACCCTTCAAGGTAACTTGGAAGAAGGCAAAGCTAGTGTATTAGATAATCTTTCTGTCGCCCGCAAGAGAATGCTCATTGGAGAAGGACAAAGTGAAAGCCGGAGCAGGAAAACTAAATATTCAGATGGTTTGAATGAGTGGCAAGGAAATGCAGCTCAGTCTTCATCTTATGAAATACTTTGGGAGGGAACTGTACAATTAAATCCATTTGTTGTTGAAACAGTCGTGGCTGTTTTCAAAAGTGGTGAGAAAACCTCAGCGAAAGACTGGTCTAAGTATGTCGAAGTTAAGGGAAGAGTACGACTAGATGCATTTGAAAAGTTTCTTCAGGAGTTACCTCTTTCTCGAAGTCGTACAGTCATGGTGGTTTCAATTTGTTGCAAGGATGGATCCTCAGAGAATGGTCCGGCAAGCATTCAGGAGGTTGCCGATTCTTATAAGCAAGGGGAGAGAGTAGGATATGCAGAACCTGCTCCGGGAGTTGAGCTGTACCTATGCCCCACTGATGTTATTACAATGAAAGTTCTCAATAAATATGTTACACACGAAGATTTTGAGAATATAAATGAGCAGAATGGTTTGATTGGATGTGTTGTGTGGCGAAGAAATAATGTAACCTCTAATATTATGCATAAGATGCCAGAACAACAATATATAAATGCTAAAAAGCTTGCACTATCTGGTCATTTGCTGGATTCTCCAACGCGTCCTGGTGTCTTAGATTCGGTGCCATATGGAACTGACAGCCCAAATTATGTGATTAATTCTAGCCTTGAAAACCATTCTGTTCAAAGTAGATCACCGACTATGAAATCTGCACTAAATACTACATTACTTGAAAATATTACATCTGAAGATAAAGATGCTTCAGAAACTGATATTCCACCTGGATTTGGTTCCTGGCCATCTGGTGATCAACAAATAAATGTACCCAAGATTATTGAATCGTCTGATATGAATGATGATTTGAATGATGATGTGCCCCCAGGATTTGGGCCCACAGCAGCATTTAGTGTAAATGGTGGCTATACTCAAAATTTGGATGACGATGATCTTCCGGAATTTGATTATGGAGTGTCTGTACCCTATCAACGTCAAATACCCCCATCTGATCAGTTGCCTCCAGAAGTTTGTAGCCTGCAGTCCTTGTCTTCTACCAAGTCTCCAAGCCAATCATCTCAGCCTCAAGTATCAATTTCTAATCAAGGCTACTTTCAGTCCAATGTAAATTTGCACTCACCTCAAGTCCTATCAGTAGGTCACCAAGTTGTGCAGCAGGTTCCAAGGCCACCAACCACTCCTCACCCATCAATGAAAATCCGCGAGTTGATACAAAAGTTTGGACAGAGTGATGCCGCATTCTCCTCTGGACCTAATTCTGCCCCTGATGTTAACGGGGTTCATATTGCCACCCAAATAGGTCAGCAGGCAGGTCCTAGCGCTTCTCAAGTTCCTATCAATGCTCATAATCTAATGCCTGAAAATAATGCATGGAATGACGAGGATGATATTCCTGAATGGCGTCCTCCATATTTTTCGCAAGGAAATAGTTCTTTGGTGGTTCCCCCAATGGAGTCTATGCCACCATCTCAGTTGGGGGTGCCAAATTTGATAGGAAATTTACAGCCAGTACATCCTTTGCCTCCAAGAGCAGCTCCACCCCAACGATGCCCACAACAAATGCCTCCACCACAAAGATGTCCTCAACAAATGCCTCCACCACAAAGAGGGCCTCCCCATATGTTGCCACCACAGGCTCTTATGCCGCAGTGTTTGCCACCTCCTTTACCACAAGGCCCTCGACCTTTAACTGGTATGGTTCGGCCAGTTCCCATGATGACACAAAGGGGACCTGGATTTGTATATGCAAATAATTCTCCGTCATTTCATACTAGCCACAATTTCAGGCCTGCCTTAAGCGGGCCAGACATCAGACCTCTTGATGCAAGGAATAGAATGATATGA___ATCTGTCCGGTGGGATGAGTGCCACTGTGTAGTTGGAAAGTTTCATTGTATAACTAGTACTTGCATCCCTCCATTTCAAGGATGCTTGTACAAATATCGTGCAACTTCAAGTTATGCCATGTACATTATAATTATTGGCCCAGTAAATGCAGCCTACATGTAACATTATTGTGGCATAACTATTCTGTTTGTGTTCATTATTGTAATGTGAACTTAAATATAATGAAGAACGATGTGGTGATTGTAATAGGTAATATAACAAAGGAAACAGTAACACCTAATAGGAAGGCCTCTTTTTGAGACGACATT

Fln Alignment:

Contig14099___LKDIEKMKQDADVDFDPSAPYSSSMDNVPLKVLFGVPNVKMRQSPTQEKKTAQTDLSSPKGHVDS--SDSVRAKLRESLASALAMVWDEQSKRDVKMENNFQIESTLLNKDGSMDYNVVKMEDPELSAMTDKYCQEESSGTLKRGREDFEQNQVLAETTVSSCCLRQGSHLEQNEIQINSELNVPYNGEAETIMFKRAKLEKEESQSEGHEQTMQSSELAQIVSVKVEAELFRIYGSVNKKYKEKARSLLFNLKDRNNPELRARVVSGEITPERLCCMTAEQLASKE
C0PT74_______________LELFEKVKKAADKAITNEAEEQRCLD--ALKALRAVPVTMGVLVSTQVGKRLRNLTKHPQENICTLATDLLDSWKKVVTSETLANSGNKATQSEDKQSKSIKVEDNAVKRES---VKVEKKPKEEEASITNKNVSSSSNGPPKL-------------TSMIKC-------------------NDAVRDKIREIIYEA--FSKVVNEAEGENMVRINACDPVRVAVTVETLMFEKLGRSNGAQKLKYRSIIFNLKDANNPDLRRRVLLGEIKPEKLIVMTAEEMASDQ

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
96	80		20		0.995493
97	80	20			0.995493
99		80	20		0.995493
102		20	80		0.995493
103	20		80		0.995493
130		88	11		0.923564
131		88	11		0.923564
156		55		44	1.0
461		83		16	0.994512
686		66		33	0.997452
1459	14			85	0.993533
1461	14	85			0.993533
1462	85			14	0.993533
1519		16		83	0.994512
3053	88	11			0.923564
3054			11	88	0.923564
3059	12	87			0.992554
3062		87		12	0.992554
3065	87	12			0.992554
3070	87	12			0.992554
3074			87	12	0.992554
3075		12	87		0.992554
3076	12		87		0.992554
3341	80			20	0.995493
3342	80			20	0.995493
3345	87	12			0.992554
3362		87	12		0.992554
3363			12	87	0.992554
3378	11			88	0.923564
3379		88		11	0.923564
3380		88	11		0.923564
3381			11	88	0.923564
3382		88	11		0.923564
3588	25			75	0.996473
3616		75		25	0.996473
3626			80	20	0.995493
3628	80		20		0.995493
3629	80		20		0.995493
3706		66		33	1.0
3803		12		87	0.992554
3821	83		16		0.994512
3851		25		75	0.996473
3856	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain