SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14091

Length: 3369 nt

UniGene Fasta

>sp_v3.0_unigene14091
CGTCGTGACCTTGTCTGTCACTCATAATCGTTCGTCATCATCATCATTATCTATCTATCCATCTGTGCCTGTTTTGCGTTGCTTGTTCTTCACATATGTGCTGTTGGTGCTACCAGAATATTCTTGGTCCCTTCCCTTATACTCTCCCCCTCCTTTCCCTTTCCTTTCTTGGTTATTTTTCTCCCACGTCTCAACAGAGAAGATTCTTGCATTTCGTTTTGAGGAATCTGGACGTCTTTGGCCTCTTGGGCAAGTAAAATACTCGTCTTTCGTGGAGATACCCAATACCCCAATTCATCCCATCTTACGAAATCTCGCTTGCAGCGGTGATAGCCATATTTGTTTTTTCAAGGATCTGGAAAGGAATCTTGGCCTCCAATCTGTCCTCTAGCATTTTCTATATTCATCCCCAGATTTGGAGTCTTGCTCTTCATTAGCAGAATCTGCCAAGCTCTGTCTTGTATCTGGGCTCATGCCAGCTTAGTTTGTATACATGTTCTCTGCTTTTATTTCCCCTCTTCTGTGCCCCTTTGCTTTGTTTTTCCATCGTTGGCCTACCCATCTAATGCTTTAGCCCTTTAACGCTTTTAAAAGTTTTATTCCCCGTTGCAAGCGCTCTGATATTTGGATAGGATTGCCTTCCAAGGAAGATGCATCCATGGATGATGATGCAGTGAAGGGGAGTCAGAGTCTGGGGCTGCTCTGTTGAAGGGCTCAATCAATCGCGGATTTTGATTGTATTCTGTGTTTTGTTCAGAGCTCAAACCCTGAGATTCTGCTGCTGGGTTTTAGCAAAACAAATTATAGCCATATCAGGTTTTTTGTCTGCATGACAGATCTGTGTATGACGATGGGATCGCCATCAGAGTTGACATTGGAATGCAGACTCTCTGCAACTTCATACTCCAGTGTGTTGAAAGCAATCAATCTTGCGAGCGATCAGTTTGAGCGAACCAGAAAGCTTGATGAATATCTAAAAGGATTGGAAGATGAACGAAGGAAAATTGAAGCTTTCAAGAGAGAACTCCCTTATTGCATGCATCTCCTCAATGATGCAATTGCTGCTTCCAAGGAACAGTTAGCAGACTGCCAACCATCCGTGCAAGCACCTAGACCGACGCAACAAACTGGTCTCCAATTTGAGGAAGAGCAGTACAACAGGCCAGTACTGGAGGAATTCATTCCTATAAAGAAAAGATGTGATGAATCCGGTGATGAATCTCAAGAAAACAACCAAAATGATTCAAAAAGAACGAAATTCGCCAATGGTGAGAAGCCAAACTGGATGGTTTCTGCTCAGCTGTGGAGTCAAAATTCCGAGACTGTAGAATGCAAAAAAGAGAAGACATCGTCCCCGGAGGAACCATTGAAGCAGCATGATTCTCAACTCAGATCTGACCAAGAACAGCTTTTCCCCACAAATTCAAACCTGTTTTCCGATTCTAAGCAGAGAATTGGAGGAGCTTTCCTACCGTTTTCAAGAGAAAGACAAAGCAATCCATCAGTGTCTGCGAGATCTAATACTGTCAAAGCCCCCCCAGACCTCGCTTTGTCGTCTGCAGAGCAGGAGGTGGGTTCGACATTCAGATGCAATGAAACTGCGCCCATGAATAATGTTACAATCACTGCTCTGAATAGATCCAAAGAACCAACAGAGACAACTGTGCCTACCCCACAGAAAGAAGCTGCCGCTAAACCTAATGGAGCTGTTTGCGTAGTGCCTCCTCCAGCTGCATCCAATGCAACTCAATCAGGTGGGCAATCTCAGAGAAAGGCTAGGAGGTGCTGGTCGCCTGAGCTGCACAGGCGTTTTGTGAATGCTCTTCAACAGCTTGGTGGCTCACAAGTAGCAACCCCAAAGCAAATCAGAGAACTCATGAAAGTGGATGGGCTCACCAACGACGAAGTCAAAAGTCATTTGCAGAAATATCGTCTACACACTAGAAGGCCTAGTCCTTCTCCACCAACGCCAGCTTCCCAAGCACCTCAGTTGGTGGTTCTTGGAGGCATTTGGGTCCCTCCTGAGTATGCTGTGGCAGCCCACCAAGGTCCAGGACTTTATAGCACAGTATCAAATACTACCAGTTCTCATTCACAATCTCACTATTGCCAATCACCAATGCCTCAGGAGCATTATTCTCAGATGAATATGTCTTCCCAACTGCAACTCCCACAGCCTGGTTACTGTGAACAGCAGCAGACTCCTTCACAGTCTCTAAGCTCACCCTCAAGGCCCTTTACAATTAACTGGACAGTCATCTGGAGCTAGGGGGACCTCTGTAGATGGTGGCAGAGAGGAAAGTGTAGGAGAAGATGGAAAATCTGAGAGTTCTAGTTGGAAAGGAGAAGAAAATGCCAAAAATGTGGAGGCAAGAAATATGGGAAGGGGTCTGTCTCTCAGAAAACAGCCACTGCAGTCTGTAGATGGAGATGAAGAGGACAGCAGAGGTAGTGAAACTACTCTCAAATTCTAGGTTTTTGATTTACATATTTTCATACGGGGAAAACTTGACTTCAGATGGAATTGGGCCTTTTTGGTGTTTGGCACTAATTCATTCTGCATGTCGAGTGGAATCCTCATCTCTCCGAACTACCATTTTGTCACTTTTGCCGAATTGAACTTCTGAAATACACATATTACAACAAGGCCACATTTTTCAGCGGTGGTTTCCACTCCTCCAATTCTTATCCATAACAAGTCTCAACGGAATTATTCATTTTGTATAAAGTCTGATGACAACAACACCAACATGACTGGTCATATAACTGACGGCATTCAACAGCATAGAAGTGCAGAGTTTTATCAAGGAAGAATGAAGGGCAGCTTCTGTTTACAGCATGGAGGCTGATATCTATAGCTTCATAGAAGCTTTACACAACACAGTTCCATAAATTTATCAATCAGTGTAGAGCATCAAGGACTTATAGGATTTTGACTGTTTTGTTTGGGATCTCTGACAGAGTCCTTTTTTTTCTTGAGGTGATTCATATTCATATTTTTCCATCGGTAGTTGTATCTATTATACAGTTGAGTGCGGTCCGTTCCGTTTTTGGCTTAAGAAGGGTTTTTGATAGTCATGGGCAGTCTTCATGCACTTTGCCTTAGACGACAGTATATAACATACTCTGTTCGTGACTTCAAATGCAAGCCTCTTCTATTGGATTGATGAATTGTCTTCCAAATAAGATGTAAACTGTGTTAATATTTATCTCTAACGAAATATTAGTTAAAAAAATTAACTTGCCTTTTCCATGTGCGTAATCACCATGAAACTTTACAGTGAACAAGTGCATTGAAGCTTTTCAATGCAGAATGTTGAAATGGATGACAATATTTAAAAAATGGAAGGAAATTGTTTACAAGGTTCT

Ace file of the UniGene sp_v3.0_unigene14091

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	myb family transcription factor [Arabidopsis thaliana] gb\|AAL31188.1\| At2g03500/T4M8.7 [Arabidopsis thaliana] gb\|AAD17450.2\| expressed protein [Arabidopsis thaliana] gb\|AAM91460.1\| At2g03500/T4M8.7 [Arabidopsis thaliana] dbj\|BAD95340.1\| hypothetical prote	-	-	0.0	38%
FL-Next	Isoform 3 of Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1	-	-	0.0	51%

Source	Gene names
Sma3	At1g13300; At1g49560; At2g03500; At3g25790; CHLREDRAFT_196473; F14J22.20; GSVIVT00009706001; GSVIVT00016820001; GSVIVT00036531001; GSVIVT00038086001; LOC_Os03g20900; LOC_Os12g39640; MICPUN_60184; Os01g0176700; Os01g0844900; Os03g0325500; Os05g0488600; Os1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Response regulator, plant B-type	IPR017053	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8GUN5-3

Fln msg: your sequence is longer than subject: 480 - 311

Fln protein: MTDLCMTMGSPSELTLECRLSATSYSSVLKAINLASDQFERTRKLDEYLKGLEDERRKIEAFKRELPYCMHLLNDAIAASKEQLADCQPSVQAPRPTQQTGLQFEEEQYNRPVLEEFIPIKKRCDESGDESQENNQNDSKRTKFANGEKPNWMVSAQLWSQNSETVECKKEKTSSPEEPLKQHDSQLRSDQEQLFPTNSNLFSDSKQRIGGAFLPFSRERQSNPSVSARSNTVKAPPDLALSSAEQEVGSTFRCNETAPMNNVTITALNRSKEPTETTVPTPQKEAAAKPNGAVCVVPPPAASNATQSGGQSQRKARRCWSPELHRRFVNALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPPTPASQAPQLVVLGGIWVPPEYAVAAHQGPGLYSTVSNTTSSHSQSHYCQSPMPQEHYSQMNMSSQLQLPQPGYCEQQQTPSQSLSSPSRPFTINWTVIWS*

Protein Length: 481

Fln nts: CGTCGTGACCTTGTCTGTCACTCATAATCGTTCGTCATCATCATCATTATCTATCTATCCATCTGTGCCTGTTTTGCGTTGCTTGTTCTTCACATATGTGCTGTTGGTGCTACCAGAATATTCTTGGTCCCTTCCCTTATACTCTCCCCCTCCTTTCCCTTTCCTTTCTTGGTTATTTTTCTCCCACGTCTCAACAGAGAAGATTCTTGCATTTCGTTTTGAGGAATCTGGACGTCTTTGGCCTCTTGGGCAAGTAAAATACTCGTCTTTCGTGGAGATACCCAATACCCCAATTCATCCCATCTTACGAAATCTCGCTTGCAGCGGTGATAGCCATATTTGTTTTTTCAAGGATCTGGAAAGGAATCTTGGCCTCCAATCTGTCCTCTAGCATTTTCTATATTCATCCCCAGATTTGGAGTCTTGCTCTTCATTAGCAGAATCTGCCAAGCTCTGTCTTGTATCTGGGCTCATGCCAGCTTAGTTTGTATACATGTTCTCTGCTTTTATTTCCCCTCTTCTGTGCCCCTTTGCTTTGTTTTTCCATCGTTGGCCTACCCATCTAATGCTTTAGCCCTTTAACGCTTTTAAAAGTTTTATTCCCCGTTGCAAGCGCTCTGATATTTGGATAGGATTGCCTTCCAAGGAAGATGCATCCATGGATGATGATGCAGTGAAGGGGAGTCAGAGTCTGGGGCTGCTCTGTTGAAGGGCTCAATCAATCGCGGATTTTGATTGTATTCTGTGTTTTGTTCAGAGCTCAAACCCTGAGATTCTGCTGCTGGGTTTTAGCAAAACAAATTATAGCCATATCAGGTTTTTTGTCTGC_-_ATGACAGATCTGTGTATGACGATGGGATCGCCATCAGAGTTGACATTGGAATGCAGACTCTCTGCAACTTCATACTCCAGTGTGTTGAAAGCAATCAATCTTGCGAGCGATCAGTTTGAGCGAACCAGAAAGCTTGATGAATATCTAAAAGGATTGGAAGATGAACGAAGGAAAATTGAAGCTTTCAAGAGAGAACTCCCTTATTGCATGCATCTCCTCAATGATGCAATTGCTGCTTCCAAGGAACAGTTAGCAGACTGCCAACCATCCGTGCAAGCACCTAGACCGACGCAACAAACTGGTCTCCAATTTGAGGAAGAGCAGTACAACAGGCCAGTACTGGAGGAATTCATTCCTATAAAGAAAAGATGTGATGAATCCGGTGATGAATCTCAAGAAAACAACCAAAATGATTCAAAAAGAACGAAATTCGCCAATGGTGAGAAGCCAAACTGGATGGTTTCTGCTCAGCTGTGGAGTCAAAATTCCGAGACTGTAGAATGCAAAAAAGAGAAGACATCGTCCCCGGAGGAACCATTGAAGCAGCATGATTCTCAACTCAGATCTGACCAAGAACAGCTTTTCCCCACAAATTCAAACCTGTTTTCCGATTCTAAGCAGAGAATTGGAGGAGCTTTCCTACCGTTTTCAAGAGAAAGACAAAGCAATCCATCAGTGTCTGCGAGATCTAATACTGTCAAAGCCCCCCCAGACCTCGCTTTGTCGTCTGCAGAGCAGGAGGTGGGTTCGACATTCAGATGCAATGAAACTGCGCCCATGAATAATGTTACAATCACTGCTCTGAATAGATCCAAAGAACCAACAGAGACAACTGTGCCTACCCCACAGAAAGAAGCTGCCGCTAAACCTAATGGAGCTGTTTGCGTAGTGCCTCCTCCAGCTGCATCCAATGCAACTCAATCAGGTGGGCAATCTCAGAGAAAGGCTAGGAGGTGCTGGTCGCCTGAGCTGCACAGGCGTTTTGTGAATGCTCTTCAACAGCTTGGTGGCTCACAAGTAGCAACCCCAAAGCAAATCAGAGAACTCATGAAAGTGGATGGGCTCACCAACGACGAAGTCAAAAGTCATTTGCAGAAATATCGTCTACACACTAGAAGGCCTAGTCCTTCTCCACCAACGCCAGCTTCCCAAGCACCTCAGTTGGTGGTTCTTGGAGGCATTTGGGTCCCTCCTGAGTATGCTGTGGCAGCCCACCAAGGTCCAGGACTTTATAGCACAGTATCAAATACTACCAGTTCTCATTCACAATCTCACTATTGCCAATCACCAATGCCTCAGGAGCATTATTCTCAGATGAATATGTCTTCCCAACTGCAACTCCCACAGCCTGGTTACTGTGAACAGCAGCAGACTCCTTCACAGTCTCTAAGCTCACCCTCAAGGCCCTTTACAATTAACTGGACAGTCATCTGGAGCTAG___GGGGACCTCTGTAGATGGTGGCAGAGAGGAAAGTGTAGGAGAAGATGGAAAATCTGAGAGTTCTAGTTGGAAAGGAGAAGAAAATGCCAAAAATGTGGAGGCAAGAAATATGGGAAGGGGTCTGTCTCTCAGAAAACAGCCACTGCAGTCTGTAGATGGAGATGAAGAGGACAGCAGAGGTAGTGAAACTACTCTCAAATTCTAGGTTTTTGATTTACATATTTTCATACGGGGAAAACTTGACTTCAGATGGAATTGGGCCTTTTTGGTGTTTGGCACTAATTCATTCTGCATGTCGAGTGGAATCCTCATCTCTCCGAACTACCATTTTGTCACTTTTGCCGAATTGAACTTCTGAAATACACATATTACAACAAGGCCACATTTTTCAGCGGTGGTTTCCACTCCTCCAATTCTTATCCATAACAAGTCTCAACGGAATTATTCATTTTGTATAAAGTCTGATGACAACAACACCAACATGACTGGTCATATAACTGACGGCATTCAACAGCATAGAAGTGCAGAGTTTTATCAAGGAAGAATGAAGGGCAGCTTCTGTTTACAGCATGGAGGCTGATATCTATAGCTTCATAGAAGCTTTACACAACACAGTTCCATAAATTTATCAATCAGTGTAGAGCATCAAGGACTTATAGGATTTTGACTGTTTTGTTTGGGATCTCTGACAGAGTCCTTTTTTTTCTTGAGGTGATTCATATTCATATTTTTCCATCGGTAGTTGTATCTATTATACAGTTGAGTGCGGTCCGTTCCGTTTTTGGCTTAAGAAGGGTTTTTGATAGTCATGGGCAGTCTTCATGCACTTTGCCTTAGACGACAGTATATAACATACTCTGTTCGTGACTTCAAATGCAAGCCTCTTCTATTGGATTGATGAATTGTCTTCCAAATAAGATGTAAACTGTGTTAATATTTATCTCTAACGAAATATTAGTTAAAAAAATTAACTTGCCTTTTCCATGTGCGTAATCACCATGAAACTTTACAGTGAACAAGTGCATTGAAGCTTTTCAATGCAGAATGTTGAAATGGATGACAATATTTAAAAAATGGAAGGAAATTGTTTACAAGGTTCT

Fln Alignment:

Contig14091___SNATQSGGQSQRKARRCWSPELHRRFVNALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYR
Q8GUN5-3_____________SGRNSSSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYR

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
416	88	11			0.923564
536		16		83	0.994512
555		50		50	1.0
563	33	66			1.0
635	80			20	0.995493
678	25		75		0.996473
750		20		80	0.995493
1338	88			11	0.923564
1354		90		10	0.90298
1443	50		50		1.0
1586	75		25		0.996473
1712	16			83	0.994512
1805	33		66		0.997452
1812		66		33	0.997452
2096		83	16		0.994512
2097	66		16	16	0.988813
2098	16	16			0.988813
2546		16	83		0.994512
2550		16		83	0.994512
2556	83			16	0.994512
2557		83	16		0.994512
2559	83	16			0.994512
2561		16		83	0.994512
2607			11	88	0.923564
2608			11	88	0.923564
2619	10		90		0.90298
2624	90	10			0.90298
2859			6	93	0.999364
2974		62		25	1.0
3226	14	85			0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
35	47	TCA TCA TCA TCA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain