SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14067

Length: 1151 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14067

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome b561 [Citrullus lanatus]	-	-	7.00649e-45	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Cytochrome b561	-	-	8.722e-15	-

Source	Gene names
Sma3	At5g38630; At5g38630/5.1; CLb561A; CLb561B; CYTB561; GSVIVT00010504001; GSVIVT00030636001; OJ1112_G03.14; OSIGBa0159I10.1; OSJNBb0039L24.15; Os04g0533500; OsI_08240; OsJ_07691; PHYPADRAFT_220343; POPTRDRAFT_662338; POPTRDRAFT_743692; POPTRDRAFT_824927; RC

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome b561, eukaryote	IPR004877	-	0.0	-
Sma3	Cytochrome b561/ferric reductase transmembrane	IPR006593	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPE1

Fln msg:

Fln protein: MDLKNGDAFGVRSIPIICLAQVFGVTACVLILISSIHYEGGLAFHSKKKIKIYNVHPVFMFVGFIFFSSQAILSYKMVPAKKRVQKAVHLVLLGSGIILGAIGISAVFKFHHETHIPSMYSLHSWLGMSAFCLFAIQWISALFAYVFPGGSKPTRAAVYPWHVFFGVFFYVMVIGTAELGILESLTFQQFMGLDRFSSHSMLVNSTGLVILIFAMLVILSIILP*

Protein Length: 226

Fln nts: ATATATCATGATATGGGCTTTTGCTGAAGTGGCTGTCAATTTCAGGACACTGAGAGAAAGACTTGAGTCACGCATTTTATTCAAAGGAATCAGACAAGGATCAGGACTATTTAATCATTAGCAAGGCTCTGTCATGTCATTTAATTCAAGATAAAGAAAGCAAAGACTTATGAGCAAAGCTCCTCAGCCAGCAAAAGCTGAGTGTCAAATTTGAGACAAACAAAATCGTAGAGCAGTAGGGGTTTACTGTGTTTGGGAAGATATTTGAGAGCAAGTTAAGTAGCAATTTCACACACAGACATTCAGAACAAAGAGAGCCTGTGGAATCTGATTAATCAAGCCTTTGCTCA_-_ATGGATTTGAAGAATGGTGATGCGTTTGGTGTCAGAAGTATACCCATTATCTGTCTCGCCCAGGTGTTTGGAGTGACAGCCTGCGTATTAATCCTCATCTCGTCGATCCACTATGAAGGGGGTTTGGCCTTCCACAGCAAAAAGAAGATCAAAATCTACAACGTTCATCCAGTCTTCATGTTTGTAGGATTCATCTTTTTTTCCAGCCAAGCAATTCTATCTTACAAAATGGTCCCTGCGAAAAAAAGGGTCCAGAAAGCAGTGCATCTGGTGCTTCTGGGCAGCGGTATCATACTGGGAGCCATTGGAATATCTGCAGTCTTCAAATTCCACCACGAGACCCACATTCCAAGCATGTACAGCTTGCATTCCTGGCTGGGTATGAGCGCCTTTTGTTTGTTCGCCATCCAGTGGATTTCGGCACTGTTCGCATACGTGTTCCCTGGAGGGTCAAAGCCAACGAGAGCGGCTGTCTATCCATGGCACGTTTTCTTTGGGGTTTTCTTCTATGTAATGGTGATTGGAACTGCAGAGTTAGGAATCCTGGAAAGCCTCACGTTCCAGCAGTTTATGGGCCTGGACCGCTTCAGCTCACACTCCATGCTTGTCAACTCTACTGGACTTGTTATTCTCATTTTTGCAATGTTGGTTATTCTCTCCATCATTCTACCATGA___AACCCTACCGGCATATTATTACGTACATATAGATATATATGCGTAAACGTTTGTGTAAAAGTCAATGGAACGTACTTTGTGTCATGTTTAATGATTTAGTTGACTTAAATGTCAAAATCTTACTTT

Fln Alignment:

Contig14067___MDLK-NGDAFGVRSIPIICLAQVFGVTACVLILISSIHYEGGLAFHSKKKIKIYNVHPVFMFVGFIFFSSQAILSYKMVPAKKRVQKAVHXXXXXXXXXXXXXXXXXXFKFHHETHIPSMYSLHSWLGMSAFCLFAIQWISALFAYVFPGGSKPTRAAVYPWHVFFGVFFYVMVIGTAELGILESLTFQQFMGLDRFSSHSMLVNSTGLVILIFAMLVILSIIL
A9NPE1_______________MDLKKNSSGFGIPSRPIIFLAQLFGVTACILILFWCIHYNGGLAFHDQNKTKIFNVHPVFMFVGFIFLSSQAILAYKMIPAKKEVQKTVHLVLQGSAIVLGAIGIYAVFKFHNESKIKNLYSLHSWLGIATISLFGLQWIAALLAFAFPGASKQRREAIYPWHVFLGVFLYAMAIGTAELGILERLTFQQFSGMDRFSKEAMLVNSTGLIILIFSMLVVLSTVL

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
288	25			75	0.996473
290		75	25		0.996473
291	75		25		0.996473
292		75	25		0.996473
293	75		25		0.996473
294		50		25	0.995533
319		75	25		0.996473
363	75		25		0.996473
369			75	25	0.996473
373		75	25		0.996473
381	25		75		0.996473
426	75		25		0.996473
451		75	25		0.996473
455		25	75		0.996473
467	66	33			0.997452
473	33			66	0.997452
486	66		33		0.997452
489	66		33		0.997452
494			66	33	0.997452
499		50		50	1.0
513	50		50		1.0
539	40	60			1.0
551			40	60	1.0
597	60	40			1.0
598	40		60		1.0
653		71	28		1.0
665	28	71			1.0
681		50		50	1.0
692		66	33		1.0
713	16		83		0.994512
721			33	66	1.0
733	66			33	1.0
735	33		66		1.0
740		83		16	0.994512
755		50	50		1.0
756		50		50	1.0
780	33	66			1.0
782		33		66	1.0
785	33			66	1.0
798	33	66			1.0
812		33		66	1.0
856		22		77	0.999999
863		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain