SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14060

Length: 2578 nt

UniGene Fasta

>sp_v3.0_unigene14060
CGTCGTGACCTTCGTCGTGACCACACAAGACAATGAGTTTTTTTTCCACTGCATGTTCACATAACCCGCCATGGCCATGAACTTCCCATCCAGAGGCCTCAGCAATTCCTGCTTCCTTAGATTCAATACAAGGACTGTGGCAAAGAGACACACTAGGGATAAACAGCATTCCTTAGATTCAATACAAAGGTACAAAGGACTGTGGCAAAGAGACACACTAGGCATAAACAGCATTTTTAGAGATGTTCTAACTGGTTCAGGGCATTAGGCTAGGGTTTTTGGCTTTGATTCAACCTACACAGAGTTTATTCAACAACACGGATTAAACAGCATTTTTAGAGATGTTCTAACTGGTTCAGGGCATTAGGCTAGGGTTTCTGGCCTGATTCAACCTACACAGAGTTTATTCAACAACACAACACTTACAGGTTAGTATAATTTTCTACCTCTCTCGTTGCGCACAAAACATTTGATTTTACTCATTACTATCCTCTGGAATGGAATGTTCTGTGTAACCTTCTTTAAATTCCAGAAGCATAAAGACCAGCTTTGCAACACAAACATTAAGTCAACTGTGAGACGCTGCTACCATGGCCGGTCTTAACGCCATGAAAATTATTAATTAACGCGACGTAGTTGGTGAATGGTGACTGAGCTGTGACGTGTCGAATCTTCATTGGATAGAGGAGGACGAAAATGCAGCCCTGAGATTGGCCAACAACCCCCTCATCACCCCAACTAACTCCACACGGCGTAATTAACGCTGCGGAGCCTTCAAGAGAAACGTTACATAAACCCTCCAAACAATTTCATTGGAGTCATGCGCATCTCTAGTCCCGCCATTATTTCTGTCTTGCTATGATTATTGCCTTCAAATTTTCCGGGAATCGTAGCTAAATTTAGCGGCTGTATGGCCAGAGCATCGTACCAGCCTACAGCTCTAGTCCCGCCATTATTTCTGCTATTCGGCTCTGTCTTGCTATAGCCTTCAAATATTTGGGGAATCGTAGCTAAATTAAACGTCAATATGGCCAGAGCATCGTGCCTGCCTACTGGTTCTCCCCTTGCCAGGGAATCGAATTGCATACCTCTTATTTCGTTCCTCAATGGAGAGATTTCAGGGATAGCTGTAAGCGTTTCGTTGAAGATTTCATCTACGAGGAGTGTGCGCAAGGGCGTTCGATGCGCTGTAGCTGAAGGATTTCGTGAAACCCTTGGCGTATCGGCACACCGGCCTCGCAGAGTTGTTGGCAGAGGTTCGAGATTGATAGGTTCTGGTTCAGCAGTGCCTAAACTTGTGGTTTCAAACAACGATCTTTCTAAACTGGTGGATACTTCAGATGAATGGATCTCTTCTCGTACAGGGATCCGTAATCGACGGATTCTTTCAGGTGATGAAACACTAACTGGTTTAGCTATAGAGTCATCTAGAAAAGCCCTTGAAATGGCGAAAGTCAGGCCAGAGGATGTTGACTTGGTTTTGATGTGTACCTCTACTCCAGATGATCTATTTGGTGGTGCTCCCCAAGTGCAGAGGGAGGTGGGTTGTATAAAAGCCTTGGCTTTTGACATTACAGCTGCTTGTAGTGGCTTTGTGTTGGGTCTTGTAACAGCTACACGTTTCATAAAAGGTGGCGGATTTGAGAATGTTTTGGTTATTGGAGCAGATGCTCTTTCTAGATATGTTGACTGGACAGACCGGGGCTCCTGCATTCTTTTTGGGGATGGAGCTGGTGCTGTGCTGTTACAGGCAGCTAAAGGAGATCAGGATGGTCTACTGGGTTTTGATCTACAGAGTGATGGGCATGGTCAAAAGCATTTGAGTGTCCCAGTTATTGGAGAAGGTGCAGTGAAGGACTTACGTAGCTCAAATGGTGCAGCACTGGAACCTCCAAAACCTTCATCCCATTCTTGTATTCAAATGAATGGGAAAGAGGTTTTCCGTTTTGCAGTAAACCGTGTTCCACAGGTTATTGAAGCAGCAATGGAAGAAGCTGGGATTGCAGGTTCACATTTGGACTGGTTGCTGCTTCATCAGGCAAACCAGAGGATTATTAGTGCTGTAGCTGATCGGCTGAAGATTCAACCAGATAGGGTAATAACAAATTTAGCTGATTATGGTAACACAAGTGCTGCATCTATTCCTCTGGCGCTTGATGAAGCTGTTCGGAGTGGAAGAGTTCAAAGTGGCCATGTTATTGCAACGGCAGGTTTTGGAGCTGGAGTTACATGGGGTTCAGCCATTGTGAGATGGGGTTGATTGAATATTGCTCACTTCAGGAATGGTAGACCAAGACAGCAGTGCTTGTCTGAAAAGGTTTTACTGCCACGAGGAAAAGTTGATTGAGAAATCTAGTTCCTCCACATATACCCATTGTTAATTTTTTGATTCTCGAGTTCTTTCCAAGCTCAATTACGGCAGCACTTGGGTTGCTTTGTTGTTTTCCTTAATTTCCATTTCATATTTTATAATTGTAACTTTGTTACGATAGAGTAATGCAAACAGAATGTTCCTGGCAGTGTGCTTGACTTGATGGATACTGGTTTTTAACGGCAATTAATAAAAGGCCTTTACTCC

Ace file of the UniGene sp_v3.0_unigene14060

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-oxoacyl-synthase III n=3 Tax=Andropogoneae RepID=B6SKS5_MAIZE	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III	IPR013751	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Beta-ketoacyl-acyl carrier protein synthase III (FabH)	IPR004655	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G62640.1	KAS III 3-ketoacyl-acyl carrier protein synthase III chr1:23192502-23194737 FORWARD LENGTH=404	67%
RefSeq	Arabidopsis thaliana	NP_001031221.1	3-oxoacyl-[acyl-carrier-protein] synthase III [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002303516.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKT2

Fln msg:

Fln protein: MARASCLPTGSPLARESNCIPLISFLNGEISGIAVSVSLKISSTRSVRKGVRCAVAEGFRETLGVSAHRPRRVVGRGSRLIGSGSAVPKLVVSNNDLSKLVDTSDEWISSRTGIRNRRILSGDETLTGLAIESSRKALEMAKVRPEDVDLVLMCTSTPDDLFGGAPQVQREVGCIKALAFDITAACSGFVLGLVTATRFIKGGGFENVLVIGADALSRYVDWTDRGSCILFGDGAGAVLLQAAKGDQDGLLGFDLQSDGHGQKHLSVPVIGEGAVKDLRSSNGAALEPPKPSSHSCIQMNGKEVFRFAVNRVPQVIEAAMEEAGIAGSHLDWLLLHQANQRIISAVADRLKIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQSGHVIATAGFGAGVTWGSAIVRWG*

Protein Length: 412

Fln nts: CGTCGTGACCTTCGTCGTGACCACACAAGACAATGAGTTTTTTTTCCACTGCATGTTCACATAACCCGCCATGGCCATGAACTTCCCATCCAGAGGCCTCAGCAATTCCTGCTTCCTTAGATTCAATACAAGGACTGTGGCAAAGAGACACACTAGGGATAAACAGCATTCCTTAGATTCAATACAAAGGTACAAAGGACTGTGGCAAAGAGACACACTAGGCATAAACAGCATTTTTAGAGATGTTCTAACTGGTTCAGGGCATTAGGCTAGGGTTTTTGGCTTTGATTCAACCTACACAGAGTTTATTCAACAACACGGATTAAACAGCATTTTTAGAGATGTTCTAACTGGTTCAGGGCATTAGGCTAGGGTTTCTGGCCTGATTCAACCTACACAGAGTTTATTCAACAACACAACACTTACAGGTTAGTATAATTTTCTACCTCTCTCGTTGCGCACAAAACATTTGATTTTACTCATTACTATCCTCTGGAATGGAATGTTCTGTGTAACCTTCTTTAAATTCCAGAAGCATAAAGACCAGCTTTGCAACACAAACATTAAGTCAACTGTGAGACGCTGCTACCATGGCCGGTCTTAACGCCATGAAAATTATTAATTAACGCGACGTAGTTGGTGAATGGTGACTGAGCTGTGACGTGTCGAATCTTCATTGGATAGAGGAGGACGAAAATGCAGCCCTGAGATTGGCCAACAACCCCCTCATCACCCCAACTAACTCCACACGGCGTAATTAACGCTGCGGAGCCTTCAAGAGAAACGTTACATAAACCCTCCAAACAATTTCATTGGAGTCATGCGCATCTCTAGTCCCGCCATTATTTCTGTCTTGCTATGATTATTGCCTTCAAATTTTCCGGGAATCGTAGCTAAATTTAGCGGCTGTATGGCCAGAGCATCGTACCAGCCTACAGCTCTAGTCCCGCCATTATTTCTGCTATTCGGCTCTGTCTTGCTATAGCCTTCAAATATTTGGGGAATCGTAGCTAAATTAAACGTCAAT_-_ATGGCCAGAGCATCGTGCCTGCCTACTGGTTCTCCCCTTGCCAGGGAATCGAATTGCATACCTCTTATTTCGTTCCTCAATGGAGAGATTTCAGGGATAGCTGTAAGCGTTTCGTTGAAGATTTCATCTACGAGGAGTGTGCGCAAGGGCGTTCGATGCGCTGTAGCTGAAGGATTTCGTGAAACCCTTGGCGTATCGGCACACCGGCCTCGCAGAGTTGTTGGCAGAGGTTCGAGATTGATAGGTTCTGGTTCAGCAGTGCCTAAACTTGTGGTTTCAAACAACGATCTTTCTAAACTGGTGGATACTTCAGATGAATGGATCTCTTCTCGTACAGGGATCCGTAATCGACGGATTCTTTCAGGTGATGAAACACTAACTGGTTTAGCTATAGAGTCATCTAGAAAAGCCCTTGAAATGGCGAAAGTCAGGCCAGAGGATGTTGACTTGGTTTTGATGTGTACCTCTACTCCAGATGATCTATTTGGTGGTGCTCCCCAAGTGCAGAGGGAGGTGGGTTGTATAAAAGCCTTGGCTTTTGACATTACAGCTGCTTGTAGTGGCTTTGTGTTGGGTCTTGTAACAGCTACACGTTTCATAAAAGGTGGCGGATTTGAGAATGTTTTGGTTATTGGAGCAGATGCTCTTTCTAGATATGTTGACTGGACAGACCGGGGCTCCTGCATTCTTTTTGGGGATGGAGCTGGTGCTGTGCTGTTACAGGCAGCTAAAGGAGATCAGGATGGTCTACTGGGTTTTGATCTACAGAGTGATGGGCATGGTCAAAAGCATTTGAGTGTCCCAGTTATTGGAGAAGGTGCAGTGAAGGACTTACGTAGCTCAAATGGTGCAGCACTGGAACCTCCAAAACCTTCATCCCATTCTTGTATTCAAATGAATGGGAAAGAGGTTTTCCGTTTTGCAGTAAACCGTGTTCCACAGGTTATTGAAGCAGCAATGGAAGAAGCTGGGATTGCAGGTTCACATTTGGACTGGTTGCTGCTTCATCAGGCAAACCAGAGGATTATTAGTGCTGTAGCTGATCGGCTGAAGATTCAACCAGATAGGGTAATAACAAATTTAGCTGATTATGGTAACACAAGTGCTGCATCTATTCCTCTGGCGCTTGATGAAGCTGTTCGGAGTGGAAGAGTTCAAAGTGGCCATGTTATTGCAACGGCAGGTTTTGGAGCTGGAGTTACATGGGGTTCAGCCATTGTGAGATGGGGTTGA___TTGAATATTGCTCACTTCAGGAATGGTAGACCAAGACAGCAGTGCTTGTCTGAAAAGGTTTTACTGCCACGAGGAAAAGTTGATTGAGAAATCTAGTTCCTCCACATATACCCATTGTTAATTTTTTGATTCTCGAGTTCTTTCCAAGCTCAATTACGGCAGCACTTGGGTTGCTTTGTTGTTTTCCTTAATTTCCATTTCATATTTTATAATTGTAACTTTGTTACGATAGAGTAATGCAAACAGAATGTTCCTGGCAGTGTGCTTGACTTGATGGATACTGGTTTTTAACGGCAATTAATAAAAGGCCTTTACTCC

Fln Alignment:

Contig14060___MARASCLPTGSPLARESNCIPLISFLNGEISGIAVSVSLKISSTRSVRKGVRCAVAEGFRETLGVS--AHRPRRVVGRGSRLIGSGSAVPKLVVSNNDLSKLVDTSDEWISSRTGIRNRRILSGDETLTGLAIESSRKALEMAKVRPEDVDLVLMCTSTPDDLFGGAPQVQREVGCIKALAFDITAACSGFVLGLVTATRFIKGGGFENVLVIGADALSRYVDWTDRGSCILFGDGAGAVLLQAAKGDQDGLLGFDLQSDGHGQKHLSVPVIGEGAVKDLRSSNGAALEPPKPSSHSCIQMNGKEVFRFAVNRVPQVXXXXXXXXXXXXSHLDWLLLHQANQRIISAVADRLKIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQ
B8LKT2_______________MARASYLPAGSCLARDSNSKPRISFLTGEISGTAVSVSLKVSATRSVYKGVRCAVAEGFRETLGVSNSARPPRRVVGRGSKLIGSGSAVPKLVVSNHDLSKLVDTSDEWISSRTGIHNRRILSGDETLTGLAVESSRKALEMAKVKPEDVDLVLMCTSTPDDLFGSAPQVQREVGCIKALAFDITAACSGFVLGLVTATRFIKGGGFENVLVIGADALSRYVDWTDRGSCILFGDAAGAVLLQAVKGDQDGLLGFDLQSDGHGQKHLSVPAMGERAVKDLGSSNGAALKPPKPPSPSCIQMNGKEVFRFAVSRVPQVIEAAMEEAGMTGSHLDWLLLHQANQRIISAVADRLQIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQ

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
245	80	20			0.999996
385		33		66	0.997452
455		33		33	0.997753
489		33	66		0.997452
1747			21	78	1.0
1800		13	86		1.0
1804		13		86	1.0
1829		14	85		1.0
1835	14		85		1.0
1836		14		85	1.0
1837		14		85	1.0
1843	90		9		0.999872
1864	85		14		1.0
1865		85	14		1.0
1889	15		85		1.0
1900	83		16		1.0
1933	13		86		0.999973
1971	77		22		0.999999
2010	11		88		0.923564
2012			11	88	0.923564
2013		88	11		0.923564
2014	88		11		0.923564
2077	58		41		1.0
2081	81	18			1.0
2092	81			18	1.0
2164	33		66		1.0
2209		63	36		1.0
2259	63		36		1.0
2297	72	27			1.0
2304	72			27	1.0
2312			14	85	1.0
2321	22		77		1.0
2323	16			83	1.0
2325	22			77	1.0
2327		76		23	1.0
2350	81	18			1.0
2351	18		81		1.0
2365		87		12	0.999964
2420		90		10	0.90298
2426	10	90			0.90298
2434			10	90	0.90298
2465	88			11	0.923564
2478	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain