SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14042

Length: 1509 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14042

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transitional endoplasmic reticulum ATPase-like n=3 Tax=Oryza sativa RepID=Q6YUV9_ORYSJ	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	AAA-type ATPase family protein, putative, expressed	-	-	1.077e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	1.49e-14	-

Source	Gene names
Sma3	AT1G64110; AT4g02470; AT4g24850; AT4g27680; AT4g28000; At1g02890; At1g64110; At1g64110/F22C12.12; At4g02470; At4g02480; At4g24850; At4g27680; At4g28000; At5g52882; At5g53540; CHLREDRAFT_177153; F19K23.7; F22D16.11; F2J10.1; F6I7.60; GSVIVT00002514001; GSV

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	thiamine diphosphokinase activity	GO:0004788	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	mismatched DNA binding	GO:0030983	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	mismatch repair	GO:0006298	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	thiamine metabolic process	GO:0006772	Biological Process	-
Sma3	thiamine diphosphate biosynthetic process	GO:0009229	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3		IPR001984	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19740.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr3:6855944-6862930 REVERSE LENGTH=993	80%
RefSeq	Arabidopsis thaliana	NP_188608.4	P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002310664.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE60

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 290 - 388

Fln protein: C*VATRKGPVREF*TGQDIG*RRSNLLGN*NSA*RVVQGAIRPR*WSYCSSVQAYRARREVEL*AREANFSKWFGDAEKLTKALFSFASRLAPVIIFIDEVDSILGARGGASEHEATRRMRNEFMAAWDGLRSKESQRILVLGATNRPFDLDDAVIRRLPRRIYVDLPDAENRAKILRVILAQEKVVDGFNFNELACATEGYSGSDLKNLCIAAAYRPIQELLEEEKKAGQRNSIPALRMLTFNDFIQAKAKVGPSVAYDAVSMNELRKWNDQYGEGGSRKRSPFGFVN*

Protein Length: 291

Fln nts: TGTTAAGTTGCAACGAGGAAAGGGCCGGTGAGAGAATTCTGAACGGGCCAAGATATTGGATAGAGGAGGTCGAATTTGCTGGGAAATTGAAACTCAGCTTAGAGGGTTGTGCAGGGGGCCATACGTCCTAGGTGATGGAGTTATTGTTCCAGTGTGCAGGCGTACAGGGCTAGGAGAGAGGTCGAACTGTAGGCCAGAGAGGCCAATTTTTCCAAGTGGTTTGGTGATGCTGAAAAGCTGACAAAGGCCCTTTTCTCATTTGCAAGCAGGCTAGCTCCAGTTATCATATTCATTGATGAGGTAGACAGCATTCTTGGGGCTCGTGGTGGTGCTTCTGAACATGAAGCAACAAGAAGAATGCGAAATGAATTTATGGCAGCTTGGGATGGCCTCCGGTCTAAAGAAAGTCAAAGAATACTTGTGCTGGGTGCTACCAACAGACCATTCGATCTTGATGATGCAGTTATCCGTCGCTTACCTAGAAGGATATATGTAGATTTACCAGATGCTGAGAACCGAGCGAAAATTCTGCGGGTCATTCTTGCTCAGGAGAAAGTGGTGGATGGTTTCAATTTCAATGAATTAGCTTGTGCAACGGAAGGTTATTCTGGGAGTGACTTGAAAAACCTATGCATCGCAGCAGCCTACAGGCCAATTCAAGAACTTCTTGAAGAAGAGAAAAAGGCTGGACAAAGAAATTCAATACCTGCTCTACGGATGCTTACTTTCAATGATTTTATTCAGGCAAAGGCTAAGGTCGGTCCATCAGTTGCCTATGATGCTGTAAGCATGAATGAGCTGAGAAAATGGAATGATCAATATGGTGAAGGAGGTAGCAGGAAGCGGTCACCATTTGGTTTTGTTAATTAG___AATATGAGGTGAATTGTGAGTGGGCTATGAGGTTACAGTTACTGCTGTTGTGAATCGATAGGCTGTTTGTTTCGGTTCTTATGTCTAGATCCCACAAAGTGTATCTCTGAAGTGTGTTGTAATGTATTGTAATGGCAATTGGGCTTTGAGGACTGGAGTTTGTTTCTCCCAAGGCAAAGGTTGGCAATTATATTTACAGAATTGTTGTGCACTTGGGAGTTTGTAGCATCAAGCTTGCTGCACATGCGGCTTATTCACAACAGCTTAAAGGAAAATTGAAGGCCTATACCTAATTACTTGACAGTCTAACAATGCAATTTTTAATTGCCTTATTTTCTTATTTATATAGAAAGGATCAGTTGATCAAATAGTGTACAATTTTTTCAGGCAGTCTTATGATTATCCTTTTCCTGGAAAGGTACCACTGCTGGAGAGTATTCACGTGTATACTATTTCTAGCAATTGTGCTTGGCTGTGCGAATAACCAGTTTCTATTCAGGCAAACCATACTTCATCACAATGAGTGATGGAAACCTTGTCATATAATTTCTATAATTTTCATTATTGTAAGTTTTAATTTATATGAACGGAGGTCAAAAGATCAGTTAGTGTTTCGTATATCATTGACTAATTTGATTA

Fln Alignment:

Contig14042___SKWFGDAEKLTKALFSFASRLAPVIIFIDEVDSILGARGGASEHEATRRMRNEFMAAWDGLRSKESQRILVLGATNRPFDLDDAVIRRLPRRIYVDLPDAENRAKILRVILAQEKVVDGFNFNELACATEGYSGSDLKNLCIAAAYRPIQELLEEEKKAGQRNS
D5AE60_______________SKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQRR-SSEQEAFTNMKTEFMALWDGFTTDQTARVTVLAATNRPEELDEAILRRLPRVFEVGMPSCIQRAKILEVILKGENVEDDIDYDYIASLCEGYSGSDLTDLCKQAAYFPIRELLEQE-KSGQLTS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
28	25		75		0.996473
33	80		20		0.995493
76	16			83	0.994512
79		83	16		0.994512
80			16	83	0.994512
256	14			85	0.993533
277	14	85			0.993533
332		83		16	0.994512
561	20		80		0.995493
562		20	80		0.995493
565			75	25	0.996473
594	66		33		0.997452
796	87		12		0.992554
913		75		25	1.0
996		14		85	0.993533
1017	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain