SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14039

Length: 932 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene14039 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycosyltransferase [Gloeobacter violaceus PCC 7421] dbj\|BAC90738.1\| gll2797 [Gloeobacter violaceus PCC 7421]	-	-	0.0	50%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	63%

Source	Gene names
Sma3	PHYPADRAFT_163063;

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 2	IPR001173	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9S6A0

Fln msg: your sequence is shorter than subject: 266 - 477

Fln protein: IMSSKRFPHVKVLQQEHGGAARARNMGFSYSRGSVIVFIDSDLVVVNEFLKEHGRILYNCFQRRGDEKTFTYGRVINTNNFDNPQSEPFKFTDNSAAFFATGNVAISRRYLIEAANLLGEMSEGPFDSSFSEYGWEDLELGVRLRQVGARIKHVPGAVGYHWHPSFNYDQLPMRIEQEKQRGRNGVHFHRKHPYLNVRLMIQMTPIHQILWFLLTLGGLLNEKTLAPLIRALVSWDQPQLAEVLISPILNWYTVQAMNEEIRELR*

Protein Length: 267

Fln nts: TATTATGTCCAGTAAACGTTTCCCTCATGTTAAAGTCCTCCAACAAGAACATGGAGGTGCAGCCAGGGCAAGGAATATGGGCTTCTCATATTCCAGAGGCTCTGTTATAGTGTTTATTGATTCAGATTTAGTTGTGGTCAATGAGTTTCTTAAAGAGCATGGAAGGATATTGTATAATTGTTTTCAGAGACGTGGCGATGAGAAGACTTTTACTTATGGGCGTGTTATAAACACCAACAATTTCGACAATCCACAGTCAGAGCCCTTCAAATTCACAGACAACTCTGCAGCCTTTTTTGCAACTGGAAATGTTGCAATATCTCGGAGGTATTTGATAGAGGCAGCAAATCTGTTGGGAGAAATGTCAGAGGGGCCGTTTGATTCAAGCTTCAGTGAGTATGGATGGGAAGATCTGGAACTTGGAGTACGGCTAAGGCAGGTTGGTGCAAGAATTAAACATGTGCCCGGTGCAGTTGGATATCATTGGCATCCCTCTTTTAACTATGATCAACTACCTATGCGAATTGAGCAGGAGAAGCAACGGGGCCGAAATGGTGTGCATTTCCATCGTAAGCATCCTTACTTGAATGTGCGGCTTATGATACAGATGACACCGATACATCAAATCTTATGGTTCCTTCTGACATTAGGTGGTCTTTTGAATGAAAAGACTCTTGCACCGCTTATTAGAGCTTTGGTAAGTTGGGATCAGCCTCAGCTTGCAGAAGTCTTGATCTCACCAATTCTAAACTGGTATACAGTTCAGGCCATGAATGAAGAAATTAGAGAGTTGAGGTGA___AAACACAGCTCAGGCACATTCAACAAAATGTTGTTAGCATTGGATAGGCTCGATTTTATTGCACAAGGAATCTTGTACGAGTATAGAAAGTACGGGTGAATCGTTTGAATTGATATGATATTATTATTATGAT

Fln Alignment:

Contig14039___IMSSKRFPHVKVLQQEHGGAARARNMGFSYSRGSVIVFIDSDLVVVNEFLKEHGRILYNCFQRRGDEKTFTYGRVINTNNFDNPQSEPFKFTDNSAAFFATGNVAISRRYLIEAANLLGEMSEGPFDSSFSEYGWEDLELGVRLRQVGARIKHVPGAVGYHWHPSFNYDQLPMRIEQEKQRGRNGVHFHRKHPYLNVRLMIQMTPIHQIXXXXXXXXXXXXXXXLAPLIRALVSWDQPQLAEVLISPILNWYTVQAMNEEIRELR
A9S6A0_______________VQSSRVFPHVKIIRQHHGGATRARNLGVRTARGAIIVFIDSDLVVTKDFLREHGAALAEAQAEHGDDNTFTYGRVVNTANFENPKSEKFKLTDNSAAFFATGNVALSRKLLLKAGNLLASAHDGPFDADFSEYGWEDLELGVRLKQVGARIKHVPLAVGYHWHPAFSMDQIPKLVDQERQRGRNGVRFFLKHPSLDVRLMTQLTLFHEGIWFLLTLGGLLTEKNLRPILGMLVAVGRPGLAAGLLSPTLNWHTVQASKEEMKRLK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
207	66		33		0.997452
228		33		66	0.997452
337		11		88	0.923564
399		11		88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
4	15	ATA ATA ATA ATA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain