SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14026

Length: 2544 nt

UniGene Fasta

>sp_v3.0_unigene14026
ATGGGGCACTCAAATGTACGTGAAAGCCTATGTTCTCGATGTAAAAATATCAAAACTGCTTCCCTAAGCCGGTTAATGAAGTAGGTCTGAGAGTTTCAGAGCCAACAATGGCCATCAAGCTCCTTCTGGTATTCAGCATCTTATGCTGGATGCCTATGCTGCTAACAGCTGCTCAGCTCACTACTGATGCAATTTTATTGTTGGAGATAAAGGGCACTCTGGGGGGTCAGCCCAGTGGTGATAACGTGCTGCTTTCAACATGGAATGCTTCAGTGCCACTCTGTCAATGGAGGGGAATCCAATGGATAAAGGCAGATGGCACACATCTCAACTGTGGCACTTCACTGGTAAGCAGAAATCTCACTCTGTACAGAGACCCATCAATTTTTGCTTACACTATCCAACTTCCTGCAGCTGGGCTCGTAGGAACAATACCCAGAGAGCTAGCAAGACTATCTAGCTTGCAGAGTCTTTATCTGAACATCAATATGCTGACAGGCCCTATACCCTTAGAGCTCTTCAATAGCTTAAGCCTTGCAATCCTGTCATTGAGCCAGAACAGGCTCAATAGCAGCATACCACCTTCACTATGGAATCTGTGTGGTCACCTGGTCGAGCTTGATCTTGATCAGAATGAACTTGTTGGTGCCATACCAGACCCTGCCCTGCCAAACATAACATGCCCAAGTCTGCAAAAACTGGATTTCAGTGATAACCATCTTGAGGGTTCGATACCTAGTTTTCTGCCCAGTTTCAGAAACCTACATGATCTTGATCTGAGTAACAATTCCTTCTCTGGAACAATCCCAGAAGCCCTTGTCAATCTGAACCTCTCTGTTTTGAATCTCTCTCACAATAATCTCACTGGTGCAATACCCAACTTTGCCCAGAATTTTAGCCAAGATGCTTTTGTGGACAATAGTCCAACTTTGTGTGGTGCTCCTTTGCAAGTCTGTGGAAAAGCACAGCAGATTGGGCATAGGTCTGGATTGAGCCCCGGTGCGGTGGCTGGAATTGTGATTGGTCTGATGGCTTCTTTTGTTGTTGCGTTGTCTGTTTTGATTTCATTTTGTAGCTCTCATGATAGGAAGATAAGGGGGGAGTTTAGGAATGAGTTTGAGGAAGAAGAAACAGGGGAGGGTAGGTTGGTCTTGTTTGAAGGTGGGGAGCATCTCACTGTCGAAGATGTTTTGAACGCAACTGGACAAGTATTGGGGAAAACAAGCTATGGTACTGTGTATAAGGCAAAGTTGGTTCAAGGAAGTACTATTGTGCTTAGGTTGCTTAAAGAAGGCACTGTTAGCAGCAGGGAATTATTCTTGCCTGCGGTTACTGATTTGGGGCGTCTCCGACATAATAATTTGGTGCCTCTGAGGGCATTTTATGAGGGTGAAAGAGGAGAAAAGTTGTTGGCCTATGATTATATGCCCAAAGGTAGCTTGGCCGATCTTCTTCATGGTTCCGGCAGGCAGCATCTGAACTGGGCTCGTAGGCAAAAGATTGCTCTTGGAGCAGCTCGGGGGCTTGCTCATCTGCATACAGGGCTTGAAACACCCATAATTCATGGGAACCTTAAATCTAAGAATGTTTTGGTTGATGAATACTTTGTAGCCCATCTCACAGATTTTGGATTGGCTGGGCTGATGAGTCCTAATGCTGCGGCCGAGATGATGGCAGCTGCAAGTCTAGAAGGTTACAAGGCTCCTGAGCTTCAGAAAATGAAGAAGGCTAATACCAAGACTGATATCTACAGCTTTGGAATTTTTCTTTTGGAAATATTGATGGGCAAGAGGCCAGGTAAGAATTCTTCAAATGAGATTGTGGATTTGCCCAGTATTGTGAAGGCTGCAGTGCTTGAAGAACGCACCATGCAGATTTTCGACATTGAAATTTTGAGGGCAATTAGGAGCCCGGCAGATGAGGGATTGCTTCATGCTCTTCAACTTGCAATGGGTTGCTGTGCACCTTCACCTGCTGTGAGGCCAGATATCAAGGAAGTTGTCAGACAATTGGAGGAATTAAGACCCAAAATGCATTCTCCTTTATACACGCCTAGGACCCCTGCTCTAGATTAGGCATGTACCTGTTTTGGATTTGATCGCCATCTCCAATGGCATTGTGTTTATTAGAACCTTGTGATGTTCCTGTACTGATCCCCTTGGTAAGAGAGTGAGGCCCATACACCTACACATGTCTTGTTAGTATAAGATGCATAACAACCAGTTAAGTGTGTTTATGATGAATATTGTTGATTTGAAAAACTTAAGTGAGATTGCAGCAATGCATCTATTCTCACTTCATTCTGTATGGTTGATCAGAAATTAGATTTTGTAAGCATGTCATAATTCTATGGAAAAACAGAAGTGATTGCATTTGAGTAAGATAAAACTGCTTGAGAGCTATCGCTATTAGCAAATGCTTTGTATAGCAGCAACTTGTAAGTTGTTGCCAAGATGGATGTTGCAACATTTTCAGAGCTCCTTTATTATTTGAAGTAATTAGTGATTAATTCCTTATCTGGCTCAGACTTACAATACAGAGCTA

Ace file of the UniGene sp_v3.0_unigene14026

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative kinase-like protein TMKL1 [Arabidopsis thaliana] sp\|P33543.1\|TMKL1_ARATH RecName: Full=Putative kinase-like protein TMKL1; Flags: Precursor emb\|CAA51385.1\| TMKL1 [Arabidopsis thaliana] dbj\|BAB01215.1\| receptor kinase [Arabidopsis thaliana] gb\|AAM	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24660.1	TMKL1 transmembrane kinase-like 1 chr3:9003641-9005751 FORWARD LENGTH=674	54%
RefSeq	Arabidopsis thaliana	NP_189109.1	putative kinase-like protein TMKL1 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002303085.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP80

Fln msg:

Fln protein: MAIKLLLVFSILCWMPMLLTAAQLTTDAILLLEIKGTLGGQPSGDNVLLSTWNASVPLCQWRGIQWIKADGTHLNCGTSLVSRNLTLYRDPSIFAYTIQLPAAGLVGTIPRELARLSSLQSLYLNINMLTGPIPLELFNSLSLAILSLSQNRLNSSIPPSLWNLCGHLVELDLDQNELVGAIPDPALPNITCPSLQKLDFSDNHLEGSIPSFLPSFRNLHDLDLSNNSFSGTIPEALVNLNLSVLNLSHNNLTGAIPNFAQNFSQDAFVDNSPTLCGAPLQVCGKAQQIGHRSGLSPGAVAGIVIGLMASFVVALSVLISFCSSHDRKIRGEFRNEFEEEETGEGRLVLFEGGEHLTVEDVLNATGQVLGKTSYGTVYKAKLVQGSTIVLRLLKEGTVSSRELFLPAVTDLGRLRHNNLVPLRAFYEGERGEKLLAYDYMPKGSLADLLHGSGRQHLNWARRQKIALGAARGLAHLHTGLETPIIHGNLKSKNVLVDEYFVAHLTDFGLAGLMSPNAAAEMMAAASLEGYKAPELQKMKKANTKTDIYSFGIFLLEILMGKRPGKNSSNEIVDLPSIVKAAVLEERTMQIFDIEILRAIRSPADEGLLHALQLAMGCCAPSPAVRPDIKEVVRQLEELRPKMHSPLYTPRTPALD*

Protein Length: 657

Fln nts: ATGGGGCACTCAAATGTACGTGAAAGCCTATGTTCTCGATGTAAAAATATCAAAACTGCTTCCCTAAGCCGGTTAATGAAGTAGGTCTGAGAGTTTCAGAGCCAACA_-_ATGGCCATCAAGCTCCTTCTGGTATTCAGCATCTTATGCTGGATGCCTATGCTGCTAACAGCTGCTCAGCTCACTACTGATGCAATTTTATTGTTGGAGATAAAGGGCACTCTGGGGGGTCAGCCCAGTGGTGATAACGTGCTGCTTTCAACATGGAATGCTTCAGTGCCACTCTGTCAATGGAGGGGAATCCAATGGATAAAGGCAGATGGCACACATCTCAACTGTGGCACTTCACTGGTAAGCAGAAATCTCACTCTGTACAGAGACCCATCAATTTTTGCTTACACTATCCAACTTCCTGCAGCTGGGCTCGTAGGAACAATACCCAGAGAGCTAGCAAGACTATCTAGCTTGCAGAGTCTTTATCTGAACATCAATATGCTGACAGGCCCTATACCCTTAGAGCTCTTCAATAGCTTAAGCCTTGCAATCCTGTCATTGAGCCAGAACAGGCTCAATAGCAGCATACCACCTTCACTATGGAATCTGTGTGGTCACCTGGTCGAGCTTGATCTTGATCAGAATGAACTTGTTGGTGCCATACCAGACCCTGCCCTGCCAAACATAACATGCCCAAGTCTGCAAAAACTGGATTTCAGTGATAACCATCTTGAGGGTTCGATACCTAGTTTTCTGCCCAGTTTCAGAAACCTACATGATCTTGATCTGAGTAACAATTCCTTCTCTGGAACAATCCCAGAAGCCCTTGTCAATCTGAACCTCTCTGTTTTGAATCTCTCTCACAATAATCTCACTGGTGCAATACCCAACTTTGCCCAGAATTTTAGCCAAGATGCTTTTGTGGACAATAGTCCAACTTTGTGTGGTGCTCCTTTGCAAGTCTGTGGAAAAGCACAGCAGATTGGGCATAGGTCTGGATTGAGCCCCGGTGCGGTGGCTGGAATTGTGATTGGTCTGATGGCTTCTTTTGTTGTTGCGTTGTCTGTTTTGATTTCATTTTGTAGCTCTCATGATAGGAAGATAAGGGGGGAGTTTAGGAATGAGTTTGAGGAAGAAGAAACAGGGGAGGGTAGGTTGGTCTTGTTTGAAGGTGGGGAGCATCTCACTGTCGAAGATGTTTTGAACGCAACTGGACAAGTATTGGGGAAAACAAGCTATGGTACTGTGTATAAGGCAAAGTTGGTTCAAGGAAGTACTATTGTGCTTAGGTTGCTTAAAGAAGGCACTGTTAGCAGCAGGGAATTATTCTTGCCTGCGGTTACTGATTTGGGGCGTCTCCGACATAATAATTTGGTGCCTCTGAGGGCATTTTATGAGGGTGAAAGAGGAGAAAAGTTGTTGGCCTATGATTATATGCCCAAAGGTAGCTTGGCCGATCTTCTTCATGGTTCCGGCAGGCAGCATCTGAACTGGGCTCGTAGGCAAAAGATTGCTCTTGGAGCAGCTCGGGGGCTTGCTCATCTGCATACAGGGCTTGAAACACCCATAATTCATGGGAACCTTAAATCTAAGAATGTTTTGGTTGATGAATACTTTGTAGCCCATCTCACAGATTTTGGATTGGCTGGGCTGATGAGTCCTAATGCTGCGGCCGAGATGATGGCAGCTGCAAGTCTAGAAGGTTACAAGGCTCCTGAGCTTCAGAAAATGAAGAAGGCTAATACCAAGACTGATATCTACAGCTTTGGAATTTTTCTTTTGGAAATATTGATGGGCAAGAGGCCAGGTAAGAATTCTTCAAATGAGATTGTGGATTTGCCCAGTATTGTGAAGGCTGCAGTGCTTGAAGAACGCACCATGCAGATTTTCGACATTGAAATTTTGAGGGCAATTAGGAGCCCGGCAGATGAGGGATTGCTTCATGCTCTTCAACTTGCAATGGGTTGCTGTGCACCTTCACCTGCTGTGAGGCCAGATATCAAGGAAGTTGTCAGACAATTGGAGGAATTAAGACCCAAAATGCATTCTCCTTTATACACGCCTAGGACCCCTGCTCTAGATTAG___GCATGTACCTGTTTTGGATTTGATCGCCATCTCCAATGGCATTGTGTTTATTAGAACCTTGTGATGTTCCTGTACTGATCCCCTTGGTAAGAGAGTGAGGCCCATACACCTACACATGTCTTGTTAGTATAAGATGCATAACAACCAGTTAAGTGTGTTTATGATGAATATTGTTGATTTGAAAAACTTAAGTGAGATTGCAGCAATGCATCTATTCTCACTTCATTCTGTATGGTTGATCAGAAATTAGATTTTGTAAGCATGTCATAATTCTATGGAAAAACAGAAGTGATTGCATTTGAGTAAGATAAAACTGCTTGAGAGCTATCGCTATTAGCAAATGCTTTGTATAGCAGCAACTTGTAAGTTGTTGCCAAGATGGATGTTGCAACATTTTCAGAGCTCCTTTATTATTTGAAGTAATTAGTGATTAATTCCTTATCTGGCTCAGACTTACAATACAGAGCTA

Fln Alignment:

Contig14026___MAIKLLLVFSILCWMPMLLTAAQLTTDAILLLEIKGTLGGQPSGDNVLLSTWNASVPLCQWRGIQWIKADGTHLNCGTSLVSRNLTLYRDPSIFAYTIQLPAAGLVGTIPRELARLSSLQSLYLNINMLTGPIPLELFNSLSLAILSLSQNRLNSSIPPSLWNLCGHLVELDLDQNELVGAIPDPALPNITCPSLQKLDFSDNHLEGSIPSFLPSFRNLHDLDLSNNSFSGTIPEAXXXXXXXXXXXXXXXXTGAIPNFAQNFSQDAFVDNSPTLCGAPLQVCGKAQQIGHRSGLSPGAVAGIVIGLMASFVVALSVLISFCSSHDRKIXXXXXXXXXXXXXXXXXLVLFEGGEHLTVEDVLNATGQVLGKTSYGTVYKAKLVQGSTIVLRLLKEGTVSSRELFLPAVTDLGRLRHNNLVPLRAFYEGERGEKLLAYDYMPKGSLADLLHGSGRQHLNWARRQKIXXXXXXXXXXXXXXXETPIIHGNLKSKNVLVDEYFVAHLTDFGLAGLMSPNXXXXXXXXXSLEGYKAPELQKMKKANTKTDIYSFGIFLLEILMGKRPGKN--SSNEIVDLPSIVKAAVLEERTMQIFDIEILRAIRSPADEGLLHALQLAMGCCAPSPAVRPDIKEVVRQLEELRPKMHSPLYTPRTPALD
B8LP80_______________MAIRLPLVFSILCWMPVLLAAAQLTTDATLLLEIKGTLGGQSSGDNVLLSTWNASIPLCQWRGIQWIKADGTHVNCNTSLVRTNLTLYRDPSISAYSIELPAVGLEGTIPKELAKLSSLQRLYLNINMLTGPIPLELFNSLSLAVLSLGQNRLSGSIPPSLWNLCGHLVELDLDQNELVGTIPDPALPNVTCSSLQKLDFSDNHLEGSIPSFLPSFRSLQDLDLSNNSFSGTIPEALANLSLSVLNFSHNNLTGAIPNFAQNFSQDAFVGNSPALCGAPLQACGKARQIGHRPRLSPGAVAGIVIGLMAFLVVALSILIALGSSHDRKIRGEFRNEFEEEETGEGRLVLFEGGEHLTVEDVLNATGQVLGKTSYGTVYKAKLVQGGTIVLRLLKEGTLSSRELFLPAITDLGRLRHGNLVPLRAFYEGERGEKLLAYDYIPKGSLADLLHGSGRQHLSWARRQKIALGAARGLAHLHTGLETPIIHGNLKSKNVLVDEYYVAHLTDFGLAGLMSPNAAAEMMAAASLQGYKAPELQKMKKANTKTDIYSFGIFLLEILMGKRPGRNASASDEIVDLPSIVKAAVLEERTMQIFDPEILRGIRSPADDGLLHALQLAMGCCAPSPAVRPDIKEVVRQLEELRPKMHSPLYTPRTTALD

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
145	71	28			1.0
159		28		71	1.0
212	85		14		0.993533
218	85			14	0.993533
355		85		14	0.993533
377	14		85		0.993533
887		30		70	1.0
968	55	44			1.0
1059	20		80		0.995493
1877	87		12		0.992554
1890		12		87	0.992554
1913			88	11	0.923564
1914		88	11		0.923564
1915		88	11		0.923564
2260	11		88		0.923564
2261	87		12		0.992554
2313	11		88		0.923564
2315	11			88	0.923564
2473			42	57	1.0
2495			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain