SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14018

Length: 1349 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene14018 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal protein L25 [Medicago truncatula] gb\|ACJ84465.1\| unknown [Medicago truncatula]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	5S rRNA binding	GO:0008097	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L25, long-form	IPR001021	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G66860.1	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain chr5:26701233-26702531 REVERSE LENGTH=249	50%
RefSeq	Arabidopsis thaliana	NP_194093.1	ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain-containing protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002298004.1	predicted protein, partial [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0B6

Fln msg:

Fln protein: MVMFWVKQANRIWGRAKGRGECALFTGLSYSRVAEAEAEVIQAIPRERAGRFFASKERKSGLVPSVVFEQEENGLDAVRRKRLLSVERDQIHGLVNKIGQEFFLSRTFELEVLAGPRSSHLLEKGRVVPRKVHRRPGTEEILDVVFVWAPKHAKLKVDVPLVFTGEDVCPGLRKGGYLNTIKKTIEYLCPADLIPPYIDIDLSNLDIGEKLHVRDINVHPSLKLLSGDDSFPICKIMGTRPLEAAITQS*

Protein Length: 251

Fln nts: AACGAGGATTGATGGCCGCGTTAAAAGAACTACCTCTGGTTTAAAAATTAGCGAGTGCCCTGCCTTGCAATGGGTCTGTTGCTGTTCATCTATATGTACTATAATGAATATTTGTCTGTGGTAAATCTAAATCTGCCCAATACTACGCAGCCCACACTCATCAACCTCTTCTTGGCGACTTCTCATGCTGTTCATCCCATTCCCCAGCAATGAACTCGTAGTCATACTTAGCTACGTTGTGGCTGATTGTGAGAGTGGCATCATTGTATGCTGTTAAAGAGTGGAGGACGAGGAATGGTCGACTGTGAAAGTATGATCATGGTGTGCTGTTAAAGAGTTGAGGCTGAGGAATGTATAGTGCCTGGATGTTAAAGTAAG_-_ATGGTTATGTTTTGGGTAAAGCAGGCGAACAGGATTTGGGGAAGGGCGAAGGGGCGAGGAGAATGCGCATTGTTTACAGGTTTGAGTTACAGCAGAGTAGCCGAGGCAGAGGCAGAGGTTATTCAGGCGATTCCTAGAGAAAGGGCGGGTAGGTTCTTCGCTTCAAAGGAGAGGAAGTCAGGGTTAGTGCCGAGCGTTGTTTTTGAACAGGAGGAGAATGGGTTGGATGCTGTTCGGCGCAAAAGGCTGTTGAGCGTGGAAAGGGATCAAATCCATGGCCTTGTGAATAAGATTGGCCAAGAGTTCTTCCTGTCTCGCACATTCGAGCTCGAGGTGCTTGCGGGCCCTCGCTCAAGCCATTTACTTGAGAAAGGAAGGGTTGTGCCGCGTAAGGTTCACCGGCGCCCTGGCACCGAGGAAATTCTCGATGTGGTATTTGTTTGGGCCCCCAAGCATGCTAAACTGAAAGTGGACGTGCCTCTGGTGTTTACAGGAGAGGATGTTTGTCCAGGATTAAGAAAAGGTGGCTATCTCAATACGATAAAGAAAACCATTGAATATCTTTGCCCTGCAGATCTTATCCCTCCTTATATCGATATTGACTTAAGCAATTTGGACATTGGTGAAAAACTGCATGTACGGGATATTAATGTGCATCCTTCATTAAAGCTTCTTAGTGGAGATGACAGTTTTCCTATATGTAAAATAATGGGAACTAGACCTTTGGAAGCTGCAATAACCCAGTCATAA___AGGTGCAAGTATGCCTTTTTTGTGTTTTCATTAGCTAATCAACTTTGGATTCTGATATTCATAATCTTGTTTTAATTGAATGGAGGAGCAGTTTGGAGAGATTAAAATTTGAATCTTTAACTGTCTCTTTATTTGAATTGCATTCAATCTGAAGATAACAAGATTAATTTCTAAACAATGGGTTATTTATGAGAGATGTCTTCTGATTAGTAGCTTCACCT

Fln Alignment:

Contig14018___MVMFWVKQANRIWGRAKGRGECALFTGLSYSRVXXXXXEVIQAIPRERAGRFFASKERKSGLVPSVVFEQEENGLDAVRRKRLLSVERDQIHGLVNKIGQEFFLSRTFELEVLAGPRSSHLLEKGRVVPRKVHRRPGTEEILDVVFVWAPKHAKLKVDVPLVFTGEDVCPGLRKGGYLNTIKKTIEYLCPADLIPPYIDIDLSNLDIGEKLHVRDINVHPSLKLLSGDDSFPICKIMGTRPLEAAITQS
A9P0B6_______________MVMVWARQANRIWARVNVRGKWALFTGLNYSRVTEAEAEVIQAIPRERTGRFFASKERKSGLVPSVVFEQEENGLAAVRRKRLLSVESDQIRGLVNKVGHQFFLSRTFELEVVAGPRSSHILEKGRVVPRKVHLRPGTEEILNVVFVWAPKCAKLKVDVPLVFKGEDVCPGLRKGGYLNTIKKTIGYLCPADLIPPYIDIDLSNLDIGEKLHVRDINVHPSLKLLSGDDSLPICKMMGTRPLEAAITQS

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
527	33		66		0.997452
543	16	83			0.994512
546		83	16		0.994512
547			83	16	0.994512
557	12	87			0.992554
560		75	12	12	0.975346
561	12		75	12	0.975346
562	12	12	75		0.975346
563	12			87	0.992554
564		12	87		0.992554
565	12	75	12		0.975346
566		87		12	0.992554
568	12		75	12	0.975346
569			87	12	0.992554
571	12	75		12	0.975346
572		12	87		0.992554
573	25	75			1.0
574		87		12	0.992554
575	12		87		0.992554
576	12		87		0.992554
577		12		75	0.975346
578		12	87		0.992554
579	85	14			0.993533
654		37		62	1.0
713		16		83	0.994512
714	16			83	0.994512
1080		54	45		1.0
1107		42		57	1.0
1180	66		33		0.997452
1182	33		66		0.997452
1194			66	33	0.997452
1218	33	66			0.997452
1229	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain