SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13993

Length: 1220 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene13993 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AvrRpt-cleavage domain containing protein	-	-	5.0e-08	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pathogenic type III effector avirulence factor Avr cleavage site	IPR008700	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0B8

Fln msg: W2: There is no M at the beginning,

Fln protein: SWLHCLKIQTSDHQRACVPTNSMTPSKVHIPSFGDWNGNQEVIISEYFDIARASRVEKEGSGNGYAVSGAKGRVPIHQTGLNSSSIPEKRGAHRKVPTSSRPVISAPLASREQDLYHVKPGAKKEIYQRKSKSATDVVSVVPSAKVGKEFGGSRTPNPSYVKTCCEKPSANNKATKKKALPKFGDWDVNDPTGGTPFTTIFDEARNEKKGAMPANKTSSQRNASSPIDEDLYKQQSYSHKKYGEKMLSIISKIFRGKMICQ*

Protein Length: 263

Fln nts: ATCTTGGCTTCATTGTCTGAAAATTCAAACATCGGACCACCAACGAGCTTGCGTTCCAACAAATTCCATGACTCCCAGCAAAGTCCACATTCCAAGCTTCGGTGACTGGAATGGGAATCAAGAGGTGATTATATCTGAATACTTCGACATTGCAAGAGCAAGTAGGGTTGAGAAAGAAGGTAGTGGAAATGGGTATGCAGTGTCTGGTGCCAAAGGGCGGGTTCCAATCCATCAGACTGGACTTAACTCCTCATCAATTCCAGAGAAACGAGGAGCGCACAGGAAAGTACCCACATCGAGTAGGCCAGTAATCAGTGCTCCTTTGGCATCTAGAGAGCAGGATCTATATCATGTTAAACCAGGAGCTAAGAAAGAAATTTATCAGAGAAAATCCAAGAGCGCAACAGACGTGGTTTCTGTGGTTCCTTCGGCCAAGGTTGGGAAGGAATTTGGTGGGAGCAGAACACCCAATCCTTCATATGTTAAGACATGCTGTGAAAAACCATCTGCAAACAACAAGGCCACCAAAAAGAAAGCTTTGCCCAAGTTTGGTGACTGGGATGTGAATGATCCAACAGGAGGAACTCCCTTCACCACTATATTCGATGAAGCAAGAAACGAAAAGAAAGGAGCCATGCCTGCTAATAAGACCTCCTCACAAAGAAATGCCTCTAGCCCTATTGATGAGGATTTATACAAGCAACAGAGCTATTCCCATAAGAAATACGGAGAGAAAATGCTTTCAATAATTTCAAAAATCTTCAGGGGAAAAATGATTTGTCAATGA___ATAATTGATGACAACGTTCATCCTTGACACTCTTCTTATCACGGAATTGGGCAATCACTTCACATGATTTCATGTGAATGTCTTCATATTATGTATACTGTTTGTACATGATTTAAAGGGATTTGGGTGTCTCTCCACAGAGTAGACCCTCACCCCGTGATAATATTGGAGCTCGCCAAAAGACATTTGTAGATTCATTGAGCTTTCTATTTCAGATAAGTTTCTTGGTCGTTCACTGACTTTCTTCCTTTATCTGGCTATATCAAAACATACGTAGATAGATTATCCTCATCATGCAATGCTAAGGATTGTACATTCCTGTGATGGCAAATATCAGTATAATGTAGCTCTTAAACTCAAAATTAATTTAGTGGTTTAAAATGCTCTATCTGTATTCTTCTTTAACTCTTTTTGGTAGTAAAACATATGCCTG

Fln Alignment:

Contig13993___IQTSDHQRACVPTNSMTPSKVHIPSFGDWNGNQEVIISEYFDIARASRVEKEGSGNGYAVSGAKGRVPIHQTGLNSSSIPEKRGAHRKVPTSSRPVISAPLASREQDLYHVKPGAKKEIYQRKSKSATDVVSVVPSAKVGKEFGGSRTPNPSYVKTCCEKPSANNKATKKKALPKFGDWDVNDPTGGTPFTTIFDEARNEKKGAMPANKTSSQRNASSPIDEDLYKQQSYSHKKYGEKMLSIISKIFRGKMICQ
A9P0B8_______________MRISDPQQAFFPTNSMAPGKVHIPSFGDWNANQDVVISEYFDIARASRVKKEGSGNGYAVSGPKGQVPIHQSGLNSSSIPEKRGAHTKVPTSIRPANSAPLAPREQDLYHVKPVAKKEIYQRKSKSVTDIVPIVPSNKVRKEFGGSRTPSPLSIKKGSEKSSANKKATKKKALPKFGDWDLNDPTGGTPFTAIFDEARNEKKGAMPADKTSLQRNASSPIDEDLYKQQSSSHKKYGEKLLSILSKIFSGKMICQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1149	75	25			0.996473
1151		25		75	0.996473
1155		25	75		0.996473
1156			75	25	0.996473
1157	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain