SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13992

Length: 2116 nt

UniGene Fasta

>sp_v3.0_unigene13992
CGTCGTGACCTTGGCTGTCACTCATTTTCAAGGTAACATTATGGAATCTTTACACTCATAGTCCAAAATCAATTCAAAGGCCTTAACTGCAGGGCATCGTAGAGTAGCGTCCCGGTGCTGGTTCTAACAGTCTCGCTCATCTTTTTGCGTACGGAATATTGAACAACCATTGACAGGCGGAGGGGTAGAAGACTTAGCTGATTGAGGGAAGGCACACAGGGAAAATATGGCGGAAGAGGCAATTTTAGGGTTTTACAGTCGCACGATGAGATTTCTCATTCAGGGGAGTTCGCTGCTTCCAAAGGGATCGACCATTCCGAGCTTTTGAATGTGATTAAGAGCCTCCATGGCTTCAGACTCGTTGACGCCCAGGATATTAAGAGTGAGAAGTGGATTCTTACTGAAGAAGGTGAAGCATACGCCACTTCAGGGTCGCCAGAAGTACAGTTTTTCTTAGCTATCCCACCAGAAGGGATCTCTCGTGAAGAACTACAGAGGAAGGTTGGCGGATCGGTTTATAACATAGGAAGCTCACAAGCTATGAAAAAAAAATGGGTGGAGCTTGGCAAACTTTTAGTATGTCGAAAGGTTGAAAGTGTAGAAGACCGAGTCAGGGAGTTGTTGATTAAAATAAGGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGAAAGCTGATTGCTTTGCAATCTTGGAAGGGTTACTCTTTAAGAAAAGGACCAAGCTATGCTCCAAAGAGAATAAAGGCAGCAACTGATCTAACTCGTGAGCAATTACAAAGGGGCACTTGGCAGGAGCTAGAGTTCAAGGAATACAATTTCAATGCACTTGGACAACCCACGGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTGCGAGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTTGTAGAGAGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACATCCTGCTCGAGATTCACATGATACATTTTTCTTAAAAGTTCCTGCATATACTCAAACATTACCTGAGGATTATTTACAGAGGGTGCAAAAAGTACATGAATCTGGTGGCTATGGATCTAGAGGATATGGGTACGATTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTGCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCACTGGCTCAGAAACCTTTTACCCCTAAAAGATACTTCTCCATTGATAGGGTTTTTCGAAATGAGGCAGTGGATAGAACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTATGTGACCGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGCATGATCAAATTACGATTCAAACCTGCATACAATCCTTATACAGAGCCCAGTATGGAAATTTTCAGCTACCATGAAGGCTTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGTGTTTTCCGCCCAGAAATGCTGCTCCCAATGGGGTTACCAGAAGATGTTTCTGTTATCGCATGGGGTTTGTCCCTTGAGCGACCTACAATGATATTATATGGCATAGACAATATAAGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTCATCAAGAAAAATCCAATTTGCCGCCTTGGCACTCAGTAGTATCCGAGTGATATAATGGACATGTTTAATTGTAGAAAATATTCATTTTTGTATCGAGAGGCTTGCTGTAATGGATATCAACAATTGAGCAAAAGTGGTAGAGCTGTGTTTCAATGATGCAGCTAACAGCTTTTCTTGAGATTCTTTCTTTGGATGAGGTTGTCGCATTTGAGGTGGTCCCTCCTTGGTTATGGCAATATTGATATAACCTGAAGAAAATATTGAAAGGAAATTTGTTTCAAAGTTTTATTTATATCGTAGCATCCTAAGAAAATTTGGACCCAAGTTGTATCCAAAGATTTGGCATTGGCCTTAGCTTACCGCATATCTTTCATGACTTAGGCACATTTCTTTAAGGTTGATCGATTTGCTTGTTAAATGTATAAAAAAGTAACCAAGTTTGAATTATATTTGACAAAAAGTT

Ace file of the UniGene sp_v3.0_unigene13992

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phenylalanyl-tRNA synthetase alpha chain [Arabidopsis thaliana] sp\|Q9T034.3\|SYFA_ARATH RecName: Full=Probable phenylalanyl-tRNA synthetase alpha chain; AltName: Full=Phenylalanine--tRNA ligase alpha chain; Short=PheRS gb\|AAM19830.1\| AT4g39280/T22F8_180 [A	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Chromosome chr3 scaffold_8, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00036385001;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	phenylalanine-tRNA ligase activity	GO:0004826	Molecular Function	-
Sma3	phenylalanyl-tRNA aminoacylation	GO:0006432	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Phenylalanyl-tRNA synthetase	IPR002319	-	-
Sma3	Phenylalanyl-tRNA synthetase, class IIc, alpha subunit	IPR004529	-	-
Sma3		IPR018157	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G39280.1	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative chr4:18281641-18284831 REVERSE LENGTH=485	76%
RefSeq	Arabidopsis thaliana	NP_195639.2	phenylalanyl-tRNA synthetase alpha chain [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002305428.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABZ4

Fln msg: your sequence is longer than subject: 384 - 257

Fln protein: MKKKWVELGKLLVCRKVESVEDRVRELLIKIRDGQEVDSKDILDLKKRKLIALQSWKGYSLRKGPSYAPKRIKAATDLTREQLQRGTWQELEFKEYNFNALGQPTEGGHLHPLLKVRAQFREIFLEMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKVPAYTQTLPEDYLQRVQKVHESGGYGSRGYGYDWKREEAEKNLLRTHTTAVSSRMLYALAQKPFTPKRYFSIDRVFRNEAVDRTHLAEFHQIEGVVCDRGLTLGDLIGVLNDFFSRLGMIKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGVFRPEMLLPMGLPEDVSVIAWGLSLERPTMILYGIDNIRDLFGHKVDLNLIKKNPICRLGTQ*

Protein Length: 385

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCAAGGTAACATTATGGAATCTTTACACTCATAGTCCAAAATCAATTCAAAGGCCTTAACTGCAGGGCATCGTAGAGTAGCGTCCCGGTGCTGGTTCTAACAGTCTCGCTCATCTTTTTGCGTACGGAATATTGAACAACCATTGACAGGCGGAGGGGTAGAAGACTTAGCTGATTGAGGGAAGGCACACAGGGAAAATATGGCGGAAGAGGCAATTTTAGGGTTTTACAGTCGCACGATGAGATTTCTCATTCAGGGGAGTTCGCTGCTTCCAAAGGGATCGACCATTCCGAGCTTTTGAATGTGATTAAGAGCCTCCATGGCTTCAGACTCGTTGACGCCCAGGATATTAAGAGTGAGAAGTGGATTCTTACTGAAGAAGGTGAAGCATACGCCACTTCAGGGTCGCCAGAAGTACAGTTTTTCTTAGCTATCCCACCAGAAGGGATCTCTCGTGAAGAACTACAGAGGAAGGTTGGCGGATCGGTTTATAACATAGGAAGCTCACAAGCT_-_ATGAAAAAAAAATGGGTGGAGCTTGGCAAACTTTTAGTATGTCGAAAGGTTGAAAGTGTAGAAGACCGAGTCAGGGAGTTGTTGATTAAAATAAGGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGAAAGCTGATTGCTTTGCAATCTTGGAAGGGTTACTCTTTAAGAAAAGGACCAAGCTATGCTCCAAAGAGAATAAAGGCAGCAACTGATCTAACTCGTGAGCAATTACAAAGGGGCACTTGGCAGGAGCTAGAGTTCAAGGAATACAATTTCAATGCACTTGGACAACCCACGGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTGCGAGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTTGTAGAGAGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACATCCTGCTCGAGATTCACATGATACATTTTTCTTAAAAGTTCCTGCATATACTCAAACATTACCTGAGGATTATTTACAGAGGGTGCAAAAAGTACATGAATCTGGTGGCTATGGATCTAGAGGATATGGGTACGATTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTGCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCACTGGCTCAGAAACCTTTTACCCCTAAAAGATACTTCTCCATTGATAGGGTTTTTCGAAATGAGGCAGTGGATAGAACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTATGTGACCGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGCATGATCAAATTACGATTCAAACCTGCATACAATCCTTATACAGAGCCCAGTATGGAAATTTTCAGCTACCATGAAGGCTTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGTGTTTTCCGCCCAGAAATGCTGCTCCCAATGGGGTTACCAGAAGATGTTTCTGTTATCGCATGGGGTTTGTCCCTTGAGCGACCTACAATGATATTATATGGCATAGACAATATAAGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTCATCAAGAAAAATCCAATTTGCCGCCTTGGCACTCAGTAG___TATCCGAGTGATATAATGGACATGTTTAATTGTAGAAAATATTCATTTTTGTATCGAGAGGCTTGCTGTAATGGATATCAACAATTGAGCAAAAGTGGTAGAGCTGTGTTTCAATGATGCAGCTAACAGCTTTTCTTGAGATTCTTTCTTTGGATGAGGTTGTCGCATTTGAGGTGGTCCCTCCTTGGTTATGGCAATATTGATATAACCTGAAGAAAATATTGAAAGGAAATTTGTTTCAAAGTTTTATTTATATCGTAGCATCCTAAGAAAATTTGGACCCAAGTTGTATCCAAAGATTTGGCATTGGCCTTAGCTTACCGCATATCTTTCATGACTTAGGCACATTTCTTTAAGGTTGATCGATTTGCTTGTTAAATGTATAAAAAAGTAACCAAGTTTGAATTATATTTGACAAAAAGTT

Fln Alignment:

Contig13992___MGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKVPAYTQTLPEDYLQRVQKVHEXXXXXXXXXXXDWKREEAEKNLLRTHTTAVSSRMLYALAQKPFTPKRYFSIDRVFRNEAVDRTHLAEFHQIEGVVCDRGLTLGDLIGVLNDFFSRLGMIKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGVFRPEMLLPMGLPEDVSVIAWGLSLERPTMILYGIDNIRDLFGHKVDLNLIKKNPICRLGTQ
D5ABZ4_______________MGFEEMPTNNFVESSFWNFDVLFQPQQHPARDSHDTFFLKVPAYTQTLPEDYLQRVQKIHESGGYGSRGYGYDWKREEAEKNLLRTHTTAVSSRMLYALAQKPFTPKRYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDKGLTLGDLIGVLNDFFSRLGMIKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGIFRPEMLLPMGLPEDVSVIAWGLSLERPTMILYGIDNIRDLFGHKVDLNLIKKNPICRLGMQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
55	81		18		0.999994
288	16		83		0.994512
514	11	88			0.923564
515		11	88		0.923564
516	11		88		0.923564
643		12	87		0.992554
664	87		12		0.992554
1030	42			14	1.0
1031		14		85	0.993533
1032	14			85	0.993533
1072			83	16	0.994512
1497		12		87	0.992554
2070	12			87	0.992554
2071		12		87	0.992554
2073	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain