SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13958

Length: 2658 nt

UniGene Fasta

>sp_v3.0_unigene13958
AAAAATAATTAGACGTCTGCATTGGGTGTACATTTGGCCTTGACAGGGACGAGGGACGACGATGATCATTTCATACATGATACATACTCCCGAAGACGAGGAGGCTGTGATGGCATTTCGTTATTCAGAGGGCCAAGCATGGACATAGCGGATCAAGCTCATGCTGTGATGAATACGAGTGCTATCAAGCGGGACGAAGACGATCAAGAGTTCCAGAACCAGCAGAAAGAGCAAGAACAGGAGCAGGAAAATGCTCAGCAGGTCCTTTCTGCCGGGAACCCGACTGTGAAGCGGCGAATAAGGGAAAGGGAAAAAGAAAAGGAGCGCACAAAGCTGAGGGAACGGCAGCGCCGGGCGATTACCTCTCGCATACTCTCGGGCTTAAGACAATACGGGAACTACACACTTCCCGTCCGAGCAGACATCAATGACGTCATTGCGGCCTTGGCGAGGGAGGCCGGCTGGACGGTCGATCCCGACGGCACTACATATCGATCACAGGCACAAACGCCTTATCCAGTCAAAGTGGCAGCTCTTTCATCGACTTCTCTAGCTGGTTCTCCTGGATCATCTGCTTCTTTGAGGAGTACTCTGGTGAAAAATCCAATAGATCACCGGTCTTCTGGTGTCAGGCTCAGGGATGGTTTCACGCTCAAATCACCAGGTTCAACTATGCTTGGAGAGAAAGGTCCAAAGAAAGAGAAAATATACAACATGGCTATTGACAACTCACTGGAGCTTATGGAAGAAGAGCAGGTTCAAGAGTTCCTTCCAAAGGAGCCAGAAAGAGATTTCTCAGGAACTCCAGATGTTCCAGTTTATGTAATGCTTCCTCTTGGAATCATCAATGAACGTTGCCAGTTAGTTGATCCAGAAAGTTTGCGGAAAGATTTAAGAGCGTTGAAATATATTAATGTTGATGGAATAATGGTGGATTGTTGGTGGGGTATTGTGGAGGGGCGAACTCCTCAGAAGTATGTTTGGTCAGGCTACAGAGAACTTTTCAATATTGTACGTGAAGCAAAACTTAAATTGCAGGTGGTCATGTCATTTCATGAGTATGGAGGAACTGCTGGGGATGATGTGAACATCCCTCTACCCAAATGGATACAGGAGATAGGGAAAGACAATCCAGATATATTTTTCACAGATCGTGAGGGCAGACGTAACACGGAATGCCTCACTTGGGGTATTGACAAAGAACGAGTCTTGAAAGGTCGAACAGCTGTTGAGGTTTATTTCGACTATATGAGAAGCTTTCGAATGGAATTTGATGACCTTTTTGTGGATGGCGCCATCTCTGAGATAGCGATTGGACTTGGTGCTTCTGGAGAGTTAAAATACCCCTCATATCCAGAAAGACATGGATGGAGGTATCCGGGCATTGGCGAGTTCCAGTGTTATGATAAATACATGCAAAAAGGTTTAAGGAAAGCGGCTGAAGCACGGGGTCACACTTTCTGGGCCAGAGGTCCTGACAATGCTGGATACTATAACTCCCAACCTCATGATACTGGCTTTTTCCGTGATGGAGGGGATTATAACAGTTACTATGGTCGTTTCTTTCTTCGTTGGTATTCACAAGGGCTAATCGAGCATAGCGATCGTGTACTAGGTCTTGCAAACCTGGCTTTTGAAGGCACGCGGATAGCTGTTAAGGTTTCTGGAGTTCATTGGTGGTATAAAACTTCTAGTCACGCTGCAGAGCTTACAGCAGGCTTCTACAATTCATCCAATCTAGATGGATATGGGCCACTTTGTCAGATATTGAAGAAACACAATGCTACATTTAACTTCAGCTGTGTAGACTTAAACAATTTAGATCATGAACAAGGGTTTATCGAAGCAATGGAAGATCCGCATGGCCTTATGTGGCAGGTTATGAATGCAGCTTGGGATGCTGGCATGCCTGTTGCAAGTGTTAATCCTGTTCCATGTCATGATAGAGATGGCTATAATAGGATACTTGAGGATGCAAAGCCAAGGAATGATCCTGATGGGCGGCACTTGATTGCTTTTACTTACCTACGGCTGAGCCCTACTTTAATGGAGAGAGCAAACTTTTCTGAATTTGATCGTTTCGTTAAACGAATGCACGGGGAAGCAGTCCTCAATCTCCACGTATAAAAAACATCAGCAGCTTTCTCTAGGTCAGCGTCAAGGGATCCCAACAAACAAAGTATGTATATTGTAATTAATTTTTTGTGTGTTAATAAAAGGAACTTTAATCCAAATCCAATGATGTCGAGAGCATCTTCCACAATAGAGTCATAGGAACCCATGAGAATATGTTGCAGGTTGGCCATAATTTATATTTTACCTCTTCCTAGATGGAAGCTGTCCACAATCGGACAATGGGAACTTTTATAAATTGCACTTGACTTTTATAAAATGCTGGACTTGGATAGCAGCGGTGAAAAGCTAGATCTATCCATTGGAGTCATTGGTCTTTAATTTCTATAACTTCATGGTAGTGAGAATGCTGTAAAATTTAAATCCTCCTTTGGATTCTTCACATCGAGGGTATATGGTAAGGAGTTATATTGTTGTCACATTTTCTTTGAAGGTAAATCACGGATTGAACCATGAAACTGCACAGGTTGTGAACTTACAACTTAAAATATACTCAAAAGAAAATCCGGAAAATGTGGAATACCG

Ace file of the UniGene sp_v3.0_unigene13958

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	beta-amylase 7 [Arabidopsis thaliana] sp\|O80831.2\|BAM7_ARATH RecName: Full=Beta-amylase 7; AltName: Full=1,4-alpha-D-glucan maltohydrolase; AltName: Full=Beta-amylase 4 gb\|AEC10613.1\| beta-amylase 7 [Arabidopsis thaliana]	-	-	57%
FL-Next	sp=Beta-amylase 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Sma3	Beta-amylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-amylase.	EC:3.2.1.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	AMY1; AMYB; AMYB1; AMYB2; AMYB3; AT4G15210; AT4g00490; AT4g17090; AT5G55700; Amy2; At2g32290; At2g45880; At3g23920; At4g15210; At4g17090; At5g45300; At5g45300/K9E15_8; At5g55700; BA1; BAM1; BMY1; Bmy1; CHLREDRAFT_112511; CHLREDRAFT_129211; CHLREDRAFT_1831

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	beta-amylase activity	GO:0016161	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	maltose biosynthetic process	GO:0000024	Biological Process	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	starch catabolic process	GO:0005983	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45880.1	BMY4, BAM7 beta-amylase 7 chr2:18878674-18881824 REVERSE LENGTH=691	57%
RefSeq	Arabidopsis thaliana	NP_182112.2	beta-amylase 7 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002320794.1	predicted protein, partial [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O80831

Fln msg: your sequence is shorter than subject: 663 - 691

Fln protein: MDIADQAHAVMNTSAIKRDEDDQEFQNQQKEQEQEQENAQQVLSAGNPTVKRRIREREKEKERTKLRERQRRAITSRILSGLRQYGNYTLPVRADINDVIAALAREAGWTVDPDGTTYRSQAQTPYPVKVAALSSTSLAGSPGSSASLRSTLVKNPIDHRSSGVRLRDGFTLKSPGSTMLGEKGPKKEKIYNMAIDNSLELMEEEQVQEFLPKEPERDFSGTPDVPVYVMLPLGIINERCQLVDPESLRKDLRALKYINVDGIMVDCWWGIVEGRTPQKYVWSGYRELFNIVREAKLKLQVVMSFHEYGGTAGDDVNIPLPKWIQEIGKDNPDIFFTDREGRRNTECLTWGIDKERVLKGRTAVEVYFDYMRSFRMEFDDLFVDGAISEIAIGLGASGELKYPSYPERHGWRYPGIGEFQCYDKYMQKGLRKAAEARGHTFWARGPDNAGYYNSQPHDTGFFRDGGDYNSYYGRFFLRWYSQGLIEHSDRVLGLANLAFEGTRIAVKVSGVHWWYKTSSHAAELTAGFYNSSNLDGYGPLCQILKKHNATFNFSCVDLNNLDHEQGFIEAMEDPHGLMWQVMNAAWDAGMPVASVNPVPCHDRDGYNRILEDAKPRNDPDGRHLIAFTYLRLSPTLMERANFSEFDRFVKRMHGEAVLNLHV*

Protein Length: 664

Fln nts: AAAAATAATTAGACGTCTGCATTGGGTGTACATTTGGCCTTGACAGGGACGAGGGACGACGATGATCATTTCATACATGATACATACTCCCGAAGACGAGGAGGCTGTGATGGCATTTCGTTATTCAGAGGGCCAAGC_-_ATGGACATAGCGGATCAAGCTCATGCTGTGATGAATACGAGTGCTATCAAGCGGGACGAAGACGATCAAGAGTTCCAGAACCAGCAGAAAGAGCAAGAACAGGAGCAGGAAAATGCTCAGCAGGTCCTTTCTGCCGGGAACCCGACTGTGAAGCGGCGAATAAGGGAAAGGGAAAAAGAAAAGGAGCGCACAAAGCTGAGGGAACGGCAGCGCCGGGCGATTACCTCTCGCATACTCTCGGGCTTAAGACAATACGGGAACTACACACTTCCCGTCCGAGCAGACATCAATGACGTCATTGCGGCCTTGGCGAGGGAGGCCGGCTGGACGGTCGATCCCGACGGCACTACATATCGATCACAGGCACAAACGCCTTATCCAGTCAAAGTGGCAGCTCTTTCATCGACTTCTCTAGCTGGTTCTCCTGGATCATCTGCTTCTTTGAGGAGTACTCTGGTGAAAAATCCAATAGATCACCGGTCTTCTGGTGTCAGGCTCAGGGATGGTTTCACGCTCAAATCACCAGGTTCAACTATGCTTGGAGAGAAAGGTCCAAAGAAAGAGAAAATATACAACATGGCTATTGACAACTCACTGGAGCTTATGGAAGAAGAGCAGGTTCAAGAGTTCCTTCCAAAGGAGCCAGAAAGAGATTTCTCAGGAACTCCAGATGTTCCAGTTTATGTAATGCTTCCTCTTGGAATCATCAATGAACGTTGCCAGTTAGTTGATCCAGAAAGTTTGCGGAAAGATTTAAGAGCGTTGAAATATATTAATGTTGATGGAATAATGGTGGATTGTTGGTGGGGTATTGTGGAGGGGCGAACTCCTCAGAAGTATGTTTGGTCAGGCTACAGAGAACTTTTCAATATTGTACGTGAAGCAAAACTTAAATTGCAGGTGGTCATGTCATTTCATGAGTATGGAGGAACTGCTGGGGATGATGTGAACATCCCTCTACCCAAATGGATACAGGAGATAGGGAAAGACAATCCAGATATATTTTTCACAGATCGTGAGGGCAGACGTAACACGGAATGCCTCACTTGGGGTATTGACAAAGAACGAGTCTTGAAAGGTCGAACAGCTGTTGAGGTTTATTTCGACTATATGAGAAGCTTTCGAATGGAATTTGATGACCTTTTTGTGGATGGCGCCATCTCTGAGATAGCGATTGGACTTGGTGCTTCTGGAGAGTTAAAATACCCCTCATATCCAGAAAGACATGGATGGAGGTATCCGGGCATTGGCGAGTTCCAGTGTTATGATAAATACATGCAAAAAGGTTTAAGGAAAGCGGCTGAAGCACGGGGTCACACTTTCTGGGCCAGAGGTCCTGACAATGCTGGATACTATAACTCCCAACCTCATGATACTGGCTTTTTCCGTGATGGAGGGGATTATAACAGTTACTATGGTCGTTTCTTTCTTCGTTGGTATTCACAAGGGCTAATCGAGCATAGCGATCGTGTACTAGGTCTTGCAAACCTGGCTTTTGAAGGCACGCGGATAGCTGTTAAGGTTTCTGGAGTTCATTGGTGGTATAAAACTTCTAGTCACGCTGCAGAGCTTACAGCAGGCTTCTACAATTCATCCAATCTAGATGGATATGGGCCACTTTGTCAGATATTGAAGAAACACAATGCTACATTTAACTTCAGCTGTGTAGACTTAAACAATTTAGATCATGAACAAGGGTTTATCGAAGCAATGGAAGATCCGCATGGCCTTATGTGGCAGGTTATGAATGCAGCTTGGGATGCTGGCATGCCTGTTGCAAGTGTTAATCCTGTTCCATGTCATGATAGAGATGGCTATAATAGGATACTTGAGGATGCAAAGCCAAGGAATGATCCTGATGGGCGGCACTTGATTGCTTTTACTTACCTACGGCTGAGCCCTACTTTAATGGAGAGAGCAAACTTTTCTGAATTTGATCGTTTCGTTAAACGAATGCACGGGGAAGCAGTCCTCAATCTCCACGTATAA___AAAACATCAGCAGCTTTCTCTAGGTCAGCGTCAAGGGATCCCAACAAACAAAGTATGTATATTGTAATTAATTTTTTGTGTGTTAATAAAAGGAACTTTAATCCAAATCCAATGATGTCGAGAGCATCTTCCACAATAGAGTCATAGGAACCCATGAGAATATGTTGCAGGTTGGCCATAATTTATATTTTACCTCTTCCTAGATGGAAGCTGTCCACAATCGGACAATGGGAACTTTTATAAATTGCACTTGACTTTTATAAAATGCTGGACTTGGATAGCAGCGGTGAAAAGCTAGATCTATCCATTGGAGTCATTGGTCTTTAATTTCTATAACTTCATGGTAGTGAGAATGCTGTAAAATTTAAATCCTCCTTTGGATTCTTCACATCGAGGGTATATGGTAAGGAGTTATATTGTTGTCACATTTTCTTTGAAGGTAAATCACGGATTGAACCATGAAACTGCACAGGTTGTGAACTTACAACTTAAAATATACTCAAAAGAAAATCCGGAAAATGTGGAATACCG

Fln Alignment:

Contig13958___AITSRILSGLRQYGNYTLPVRADINDVIAALAREAGWTVDPDGTTYRSQAQTPYPV-------KVXXXXXXXXXXXXXXXXXXXXXXVKNPIDHRSSGVRLRDGFTLKSPGSTMLGEKGPKKEKIYNMA---IDNSLELMEEEQVQEFLPKEPERDFSGTPDVPVYVMLPLGIINERCQLVDPESLRKDLRALKYINVDGIMVDCWWGIVEGRTPQKYVWSGYRELFNIVREAKLKLQVVMSFHEYGGTAGDDVNIPLPKWIQEIGKDNPDIFFTDREGRRNTECLTWGIDKERVLKGRTAVEVYFDYMRSFRMEFDDLFVDGAISEIAIGLGASGELKYPSYPERHGWRYPGIGEFQCYDKYMQKGLRKAAEARGHTFWARGPDNAGYYNSQPHDTGFFRDGGDYNSYYGRFFLRWYSQGLIEHSDRVLGLANLAFEGTRIAVKVSGVHWWYKTSSHAAELTAGFYNSSNLDGYGPLCQILKKHNATFNFSCVDLNNLDHEQGFIEAMEDPHGLMWQVMNAAWDAGMPVASVNPVPCHDRDGYNRILEDAKPRNDPDGRHLIAFTYLRLSPTLMERANFSEFDRFVKRMHGEAVLNLH
O80831_______________AITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGTKPTGGSSAVAAGSSASHIASQQTSPPALRVVSSGLRSPVE--LSSCRMKGVFTPAPSPYDMLPIQSPELVGSVNKAEGLVGCSVDVINSKQILEIPPNLTEQDFSGTPYVPVYVMLPLGVINMKCELADRDGLLKHLRILKSIHVDGVKVDCWWGIVEGHSPQEYNWTGYRQLFQMVRDLNLKIQVLMSFHECGGNVGDDVCIPLPHWVAEIGRTNPDIYFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRIELAEFLEDGVISMVEIGLGPCGELRYPSCPIKHGWRYPGVGEFQCYDKYLSKSLRKAAESRGHLFWARGPDNTGSYNSQPQGTGFFCDGGDYDGLYGRFFLKWYSQVLIDHADQILCLAKLVFDSSCIAAKLPDVHWWYRTASHAAELTAGFYNPSNRDGYSAIASTLKKHGATLSFVSGEVQVLNRPDDFSGALGEPEAVAWQVLNAAWDSGTPVARENSLACHDRVGYNKMLESVKFRNDPDRKHLSSFAYSRLVPALMEGHNIVEFERFVKKLHGEAVMNHH

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
43			20	80	0.995493
73			16	83	0.994512
74			16	83	0.994512
75		83	16		0.994512
159	81			18	0.999994
160			81	18	0.999994
198		90		10	0.90298
200	90		10		0.90298
201	90		10		0.90298
300	83		16		0.994512
1048	20	80			0.995493
1169		87		12	0.992554
1413	87	12			0.992554
1416	87			12	0.992554
1631	14	85			0.993533
1633			85	14	0.993533
1647		87		12	0.992554
1765	11			88	0.923564
1768			90	10	0.90298
1769	90			10	0.90298
1975	42		57		1.0
1976	85		14		0.993533
2099		80	20		0.995493
2100	80		20		0.995493
2551	11			88	0.923564
2552		11		88	0.923564
2553		11	88		0.923564
2557		50		50	1.0
2601		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain