SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13939

Length: 702 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene13939 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02458, Transferase, Transferase family	-	-	4.0e-15	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transferase	IPR003480	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002316230.1	predicted protein [Populus trichocarpa]	5.0e-18	47%

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
29			33	66	0.997452
30	66		33		0.997452
31	66		33		0.997452
32	33		66		0.997452
34			33	66	0.997452
35	33	66			0.997452
36	66		33		0.997452
37		33		66	0.997452
39			66	33	0.997452
40			66	33	0.997452
65	75		25		0.996473
130	75		25		0.996473
164		17	76	5	1.0
178	23	76			1.0
198		68		25	1.0
200		75		25	1.0
240		41	58		1.0
249		58		41	1.0
254	11		88		0.999952
265	52		5	41	1.0
269	88			11	0.999952
360		57		42	1.0
363		37		62	1.0
367	37	62			1.0
369	12		87		0.992554
391			62	37	1.0
399			75	25	1.0
400	25	75			1.0
433	25		75		0.996473
457		80		20	0.995493
504		57		42	1.0
519			66	33	1.0
532	66	33			1.0
535		66		33	1.0
554		66		33	1.0
597		40		60	1.0
602		40		60	1.0
611	60		40		1.0
656		20		80	0.995493
663			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain