SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13895

Length: 1791 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13895

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glucan endo-1,3-beta-glucosidase 11 [Arabidopsis thaliana] sp\|Q8L868.1\|E1311_ARATH RecName: Full=Glucan endo-1,3-beta-glucosidase 11; AltName: Full=(1->3)-beta-glucan endohydrolase 11; Short=(1->3)-beta-glucanase 11; AltName: Full=Beta-1,3-endoglucanase 1	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	0.0	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G32860.1	Glycosyl hydrolase superfamily protein chr1:11907308-11908803 REVERSE LENGTH=426	56%
RefSeq	Arabidopsis thaliana	NP_174563.2	glucan endo-1,3-beta-glucosidase 11 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002317055.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLQ3

Fln msg:

Fln protein: MEGPRSGLALIISNFIFFLLSGSARTGTASNATIGINYGQIADNLPSPQRVAGLLRSINIIKKVKLYDANRQVLEAFANTGIEFVVGLSNEYVGNMTDQAAAVDWVKENVQGYLPGTNITCIAVGNEVFTGNDTLLMSNLVPAMQNIHSALVSLGLQGSVNVTTAHSSGVLATSYPPSAGAFKPELTAFLRPLLDFLSQTTSPFLINAYPYFAYKDDADQIPLDYVLFQPNAGMVDQGTNLHYSNMLHAQIDAVYSALSALGYSAMEIKVSETGWPSKGDSDEVGATPENARIYNGNLLQLLAQNQGTPMRPSVRLESYVFALFNEDQKPGKTSERNYGLFKSDGSPAYDVGLHGSLSGASANPILYSKVVVSSLCSLFLLFFLGL*

Protein Length: 388

Fln nts: CAGGATAATTTGGCTTCAAAATTCACATAAAGATATATATATTGTAGAGGAGAGCAGAGAGGAAATATTACCAGAGCAGTAGCAGTAGAATAAGGGCCAGTCTGGGCCCAGGAAGGACTGCAGATTGGAGCAGCAGCACATTTTATTCAGTTCCCATTGCTGGCCAAGGCCACCAATCAATTTTGCCATTGATCATATTGTTGCTGCTGCAGTTGGTGGGGACGGAGGAGGGACTAAGCATTGGCA_-_ATGGAAGGACCCCGATCAGGATTGGCATTAATCATTTCCAATTTCATCTTCTTCTTACTCTCAGGTAGCGCAAGGACTGGTACAGCGAGCAACGCGACAATTGGCATCAATTACGGGCAAATTGCAGATAACTTGCCGTCTCCGCAGCGCGTAGCGGGGCTACTGCGCTCGATCAATATTATCAAGAAAGTGAAATTATACGACGCGAACCGGCAGGTTCTAGAGGCGTTTGCGAACACCGGAATCGAATTTGTAGTGGGGCTGAGCAACGAATATGTGGGCAATATGACGGATCAGGCAGCGGCAGTGGACTGGGTGAAGGAAAACGTGCAGGGTTACTTACCGGGCACCAACATCACGTGCATTGCCGTGGGCAACGAAGTCTTCACGGGCAACGATACGCTCCTGATGTCCAATCTTGTTCCAGCGATGCAGAACATACATTCGGCTCTGGTAAGCCTGGGGTTGCAGGGCTCCGTGAACGTGACCACGGCGCATTCCAGCGGAGTGCTGGCCACGTCATACCCGCCCTCCGCGGGCGCCTTCAAACCGGAGCTCACCGCCTTCCTGAGACCGCTTCTTGATTTTCTTTCCCAGACAACGTCGCCTTTCCTCATCAATGCCTACCCCTATTTTGCCTACAAGGACGACGCCGATCAAATCCCGCTGGACTACGTTCTCTTCCAACCGAACGCCGGAATGGTGGACCAAGGCACGAATCTGCACTACAGCAACATGCTCCACGCTCAGATAGACGCCGTTTATTCTGCGCTCTCGGCGCTCGGTTACTCCGCCATGGAAATCAAGGTTTCCGAGACCGGATGGCCCTCCAAGGGCGACTCGGACGAAGTCGGCGCTACGCCGGAAAATGCCCGGATTTATAATGGCAACCTCCTCCAGCTCCTGGCGCAGAACCAGGGGACTCCCATGCGACCGTCGGTTAGGCTGGAAAGCTATGTCTTTGCGCTCTTCAACGAGGATCAAAAGCCTGGCAAGACATCGGAAAGAAACTACGGCCTCTTTAAATCCGACGGCAGCCCAGCTTATGATGTGGGATTGCACGGATCCCTGTCAGGCGCCTCTGCTAATCCAATCCTCTACAGCAAGGTCGTGGTTTCGAGCCTCTGCTCCTTGTTTCTTCTATTCTTTTTAGGGCTTTAA___GGCGGAGAACACGAACCCGAAAACGAACAGTAACAGGAACCCGAACGCCTGAATTGTTGCTGCTATTCTCAATCAACAAAAGATCGGAGCAATAACAGCCCACACGGCCATGGCGAAAAAATCTTACGGTGTAATTGCAGATGGAATGGGCGAATTTGTCACAATTCCTTTGAAACAGGGGATGCTGTGCGGGCGCCCGCCATATTCCAGGTTTCTATCCCTTGGCTCAGCAAAAAAATAGCAATAGCTGCATCTTTGAATCCACAAAGATTGGTTGTAGAACTGGTTTGATTCTTTATGAGCAAATAGCATCAATTTTTTTCGGGCCGGAACTGTGTGCTAGAAGGTAAAATTTAGCATCCATATGTATAGAAAATATTACTG

Fln Alignment:

Contig13895___MEGPRSGLALIISNFIFFLLSGSARTG----TASNATIGINYGQIADNLPSPQRVAGLLRSINIIKKVKLYDANRQVLEAFANTGIEFVVGLSNEYVGNMTDQAAAVDWVKENVQGYLPGTNITCIAVGNEVFTGNDTLLMSNLVPAMQNIHSALVSLGLQGSVNVTTAHSSGVLATSYPPSAGAFKPELTAFLRPLLDFLSQTTSPFLINAYPYFAYKDDADQIPLDYVLFQPNAGMVDQGTNLHYSNMLHAQIDAVYSALSALGYSAMEIKVSETGWPSKGDSDEVGATPENARIYXXXXXXXXXXXXXTPMRPSVRLESYVFALFNEDQKPGKTSERNYGLFKSDGSPAYDVGLHGSLSGASANPILYSK
B8LLQ3_______________MEGPKSILAIII--LFFCLLSGRAGTGIILGTASNATIGINYGQVGDNLPSPQRVARLLRSINIIKKVKLYDANREVLEAFANTGIEFVVGLSNEYVGNMTDQAAAVEWVKENVQGYLPGTNITCIAVGNEVFTGNDTALMANLVPAMQNIHSALVSLGLQGSVNVTTAHSSGVLSTSYPPSAGAFKPELTAFLRPLLDFLSQTSSSFLINAYPYFAYKADPDNIPLDYVLFQPNAGMVDAATNLHYGNMLHAQIDSVYSALSALGYPALEVKVSETGWPSKGDSDEVGATPENARIYNSNLLQLLAQNQGTPMRPSLRLETYVFALFNEDQKPGQTSERNYGLFKSDGSPAYDVGLHGSLSGGSSNTNSYNK

SNPs (tot: 3)

Position	A %	C %	G %	Probability
471	85	14		0.993533
1415	20		80	0.995493
1693	85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain