SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13827

Length: 2894 nt

UniGene Fasta

>sp_v3.0_unigene13827
ATCGTCGTGACCTTGGCTGTCACTCATTCTTTTTTTCTTCCATCCAGGTTTCCATTGTAATATCCCTTCTGTCCCATTGTTTGGTTTTCCATACGCAACAATTACAGGTCACTAGAGATTGCAAAATATAAATCTGTTTGAATTATTTTCACAGGAGAACTTGGTTTGTCCCTTCCATATCTCCACAGAGTGGGTATTTACAGAAGTCTCACTCTGAACATGTCGACTACTGAGGTGAAAACTCCCACTAGCATCAGCCGTTCCAGATTAGGCGCGTTCTCACCACCACAGAGGGTTTTAAGACCCGATCTGGAGTCCAAGGTTCGAGTTGTCATAAGAGTGCGACCGTTTCTTCCTGTAGAGATCGAGGCAGCCAAAGGGAAGCCGAAGTCCTGCTTAACAATTACAAAGGCCAATGGTCATTTGGAGAGAGAGGATACACTTCTTATTAAGGACATGAAAACTAGCCGGAATGAGTCTTATAAGCTCGATTGGTGCTATGGACAAGAAGATGATGTGCGTCAAATATTTTCTAGAGAAGTCGATCCAATCCTTCCTGGGTTGTTTCGAGGCTCCAATGCCACTGTATTTGCATATGGGGCTACAGGAAGTGGCAAAACTTACACAATGCAGGGAACAAACGAGAGGCCTGGTATTATGCCCTTGGCAATGAGCAGCATTATTACAATGGCAGAGAACACAGAGAGCAGAGTAGAGATTTCTTATTATGAGGTTTACATGGACCGTTGCTATGACCTTCTGGAGCCTAAGAATAAAGAAGTTCCAGTTTTGGAAGACTCAGAGGGTCGTGTGCAACTCCGTGGTCTTGCTCAGGTTCGTGTGAATTCACTGGAGGAATTTCAGGAAGTGTTCAATTATGGTTGTTTGCGGCGAAAAGTTGGTCACACTGGATTAAATGATGTTTCAAGCCGTAGTCATGGAGTACTAATGGTTTCTGTTTCTAGTGATGATGGGAATCCAGATATGCCTCTTGTAGGCAAGCTCAATCTTATTGATCTTGCAGGCAATGAGGATAACAGAAGAACTGGTAATGAGGGTCTTCGTCTTACAGAGAGTGTCAGAATTAACCAGTCACTCTTTGCACTGTCGAATGTTATCCATGCATTGAATGCCAATGAGAACCGTGTGCCATATCGAGACAGCAAATTGACCCGGATTCTGCAGGATTCACTAGGGGGAACAAGTCGTTCTCTGATGATTGCTTGCTTGAATCCAATATCATACCAAGAAGCCTTACACACAGTCAGTCTTGCTGCCCGGTCACGACAGATAGTTAATCATGTTGCAATGGAAAGCAGACGAGATACCCCGAGGCCAAAAGTGGATATGAATGCAAGGCTCAATGCATGGCTTGAGACAAAATCTAAGAACAATTGTAGGGTTGCAAAACCTGGTTCTCAGTCTGTGGGAAGGTTGATTTCTCCCTTGTCATCTAGACTAACTCCCCATGGATCGATGACAGCTACTACCAATAGCAACTTTTCCACACCCAAAGGACGGAAGCTTCTTGGACCACCGGGTCGTGTAAAGGTAACCTCAAGTGAGGAAAGTCCCCAGATAAACTCTTCAAAAGCTGGAGAACATGCTGGTTCAGTAATGGCTGCATCGGATTGTCAGCCAGACGACTATAAGAAGATCAACACTCCCTCAAAAACAATACAATCGCAAGAAATTAGCCAAGCTGATTCTGAAGCTCCTATTGCCAGTGAACTAAATAATATAACCCTGCCCAGTGATGTGGCTAAAGAGGGTTCTGATAAAGAGAACAGGGTGGTCAAAGAATTGATTTTTGATGACTCTTCACCCCCATTGAGCGTAAGGTTAAAACAGCTACGAAGTGCTTTGACAGAGATGCTTACCCCACAGAATTCCAATGTAGAAAGATATCTTCCAGCAAATGTTACCCCCTGTAGCAAGCTTTCTGGCATGGAACCATCCCAGATAAAGCAAATTCTTCCAATGACTACAACCCCCTCTTCAATACCTTGTGGAATACCCGCAGAGCCAAACACACCAAGGACTCCCCAAGTGGAACATAGGGAGGGAAAAGAAGAAACTTCCCAAGTTGGAACACCATTAGAGAGGTTCAGTGCACGTGGTTCAGGGTTAAAGAAATCTCTCACCAGAGATTACCTGTCTTTCCTCAATACTGCTAGCAGAGAGGAGCTGCTTGAGTTGAGGGGTATTGGAGAGAAGAGAGCCAATGATATTCTTGAACTACGACAAAGGTCTCCTGAGCCATTGAAGGAGCTTCAGGATCTAGAAAAAATTGGGCTTTCTTCCAAGCAGATAAAAACCATCTTCAATAGTACTGCTCGGCAAATACTATCTTGAATGAAAGGGATGCTGCAGTCTTCCATAAGTCACATCCTCAGTTCATTTATTTTGAATTGTACAATAGGCATTTATTGTTTTGTAATTTGCTATGCTGGATTTGCATTTTTTTCCCAACCTTTGGGAAAATGTTTTTATTTACCAGGTGATGGTAAATCAAGTGCATAGAACTGTGCTTTTTAAATTCCAGTAATTGTCATATTTTATTGGACCTTTTCTGTCAATGACTTGAGGTATGCTAACAGAGCTTTGCGTGGGGGCTAGTACTCTATCAGTCATTGGCAAGTATAGTGCACTGTAAATTTGGATCAGAAATTTCTTTTGAAGAATATTCCATGGTTGTTTGAATCTTTTGTTTGAACATGTGTACGATGATATTTTTGTCCACTGTATGACAATAATTTACTCTGGGACACTGGCTAGCTTATATTTGGAGCATGTATTCGCTTGACTTTGTATGGCTCTAGACTTATGCATTACAGAAGCAAATTCTGAGTCTCGCGGTTAAGTCGTTTTGACATTATTTTAAGTACTTAGCC

Ace file of the UniGene sp_v3.0_unigene13827

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin family member 22 [Arabidopsis thaliana] gb\|AAX12877.1\| At5g02370 [Arabidopsis thaliana] gb\|AED90464.1\| kinesin family member 22 [Arabidopsis thaliana]	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%

Source	Gene names
Sma3	At5g02370; GSVIVT00003315001; GSVIVT00004824001; GSVIVT00021318001; GSVIVT00027185001; GSVIVT00031823001; GSVIVT00037673001; MICPUN_58849; OJ1281_H05.2; Os05g0459400; OsI_20222; OsJ_18806; POPTRDRAFT_416754; RCOM_0915900; T1E22_130; VITISV_007130; VITISV_

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-hairpin-helix motif	IPR000445	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G02370.1	ATP binding microtubule motor family protein chr5:503444-506388 FORWARD LENGTH=628	0.0	45%
RefSeq	Arabidopsis thaliana	NP_195857.2	kinesin family member 22 [Arabidopsis thaliana]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: your sequence is longer than subject: 712 - 509

Fln protein: MSTTEVKTPTSISRSRLGAFSPPQRVLRPDLESKVRVVIRVRPFLPVEIEAAKGKPKSCLTITKANGHLEREDTLLIKDMKTSRNESYKLDWCYGQEDDVRQIFSREVDPILPGLFRGSNATVFAYGATGSGKTYTMQGTNERPGIMPLAMSSIITMAENTESRVEISYYEVYMDRCYDLLEPKNKEVPVLEDSEGRVQLRGLAQVRVNSLEEFQEVFNYGCLRRKVGHTGLNDVSSRSHGVLMVSVSSDDGNPDMPLVGKLNLIDLAGNEDNRRTGNEGLRLTESVRINQSLFALSNVIHALNANENRVPYRDSKLTRILQDSLGGTSRSLMIACLNPISYQEALHTVSLAARSRQIVNHVAMESRRDTPRPKVDMNARLNAWLETKSKNNCRVAKPGSQSVGRLISPLSSRLTPHGSMTATTNSNFSTPKGRKLLGPPGRVKVTSSEESPQINSSKAGEHAGSVMAASDCQPDDYKKINTPSKTIQSQEISQADSEAPIASELNNITLPSDVAKEGSDKENRVVKELIFDDSSPPLSVRLKQLRSALTEMLTPQNSNVERYLPANVTPCSKLSGMEPSQIKQILPMTTTPSSIPCGIPAEPNTPRTPQVEHREGKEETSQVGTPLERFSARGSGLKKSLTRDYLSFLNTASREELLELRGIGEKRANDILELRQRSPEPLKELQDLEKIGLSSKQIKTIFNSTARQILS*

Protein Length: 713

Fln nts: ATCGTCGTGACCTTGGCTGTCACTCATTCTTTTTTTCTTCCATCCAGGTTTCCATTGTAATATCCCTTCTGTCCCATTGTTTGGTTTTCCATACGCAACAATTACAGGTCACTAGAGATTGCAAAATATAAATCTGTTTGAATTATTTTCACAGGAGAACTTGGTTTGTCCCTTCCATATCTCCACAGAGTGGGTATTTACAGAAGTCTCACTCTGAAC_-_ATGTCGACTACTGAGGTGAAAACTCCCACTAGCATCAGCCGTTCCAGATTAGGCGCGTTCTCACCACCACAGAGGGTTTTAAGACCCGATCTGGAGTCCAAGGTTCGAGTTGTCATAAGAGTGCGACCGTTTCTTCCTGTAGAGATCGAGGCAGCCAAAGGGAAGCCGAAGTCCTGCTTAACAATTACAAAGGCCAATGGTCATTTGGAGAGAGAGGATACACTTCTTATTAAGGACATGAAAACTAGCCGGAATGAGTCTTATAAGCTCGATTGGTGCTATGGACAAGAAGATGATGTGCGTCAAATATTTTCTAGAGAAGTCGATCCAATCCTTCCTGGGTTGTTTCGAGGCTCCAATGCCACTGTATTTGCATATGGGGCTACAGGAAGTGGCAAAACTTACACAATGCAGGGAACAAACGAGAGGCCTGGTATTATGCCCTTGGCAATGAGCAGCATTATTACAATGGCAGAGAACACAGAGAGCAGAGTAGAGATTTCTTATTATGAGGTTTACATGGACCGTTGCTATGACCTTCTGGAGCCTAAGAATAAAGAAGTTCCAGTTTTGGAAGACTCAGAGGGTCGTGTGCAACTCCGTGGTCTTGCTCAGGTTCGTGTGAATTCACTGGAGGAATTTCAGGAAGTGTTCAATTATGGTTGTTTGCGGCGAAAAGTTGGTCACACTGGATTAAATGATGTTTCAAGCCGTAGTCATGGAGTACTAATGGTTTCTGTTTCTAGTGATGATGGGAATCCAGATATGCCTCTTGTAGGCAAGCTCAATCTTATTGATCTTGCAGGCAATGAGGATAACAGAAGAACTGGTAATGAGGGTCTTCGTCTTACAGAGAGTGTCAGAATTAACCAGTCACTCTTTGCACTGTCGAATGTTATCCATGCATTGAATGCCAATGAGAACCGTGTGCCATATCGAGACAGCAAATTGACCCGGATTCTGCAGGATTCACTAGGGGGAACAAGTCGTTCTCTGATGATTGCTTGCTTGAATCCAATATCATACCAAGAAGCCTTACACACAGTCAGTCTTGCTGCCCGGTCACGACAGATAGTTAATCATGTTGCAATGGAAAGCAGACGAGATACCCCGAGGCCAAAAGTGGATATGAATGCAAGGCTCAATGCATGGCTTGAGACAAAATCTAAGAACAATTGTAGGGTTGCAAAACCTGGTTCTCAGTCTGTGGGAAGGTTGATTTCTCCCTTGTCATCTAGACTAACTCCCCATGGATCGATGACAGCTACTACCAATAGCAACTTTTCCACACCCAAAGGACGGAAGCTTCTTGGACCACCGGGTCGTGTAAAGGTAACCTCAAGTGAGGAAAGTCCCCAGATAAACTCTTCAAAAGCTGGAGAACATGCTGGTTCAGTAATGGCTGCATCGGATTGTCAGCCAGACGACTATAAGAAGATCAACACTCCCTCAAAAACAATACAATCGCAAGAAATTAGCCAAGCTGATTCTGAAGCTCCTATTGCCAGTGAACTAAATAATATAACCCTGCCCAGTGATGTGGCTAAAGAGGGTTCTGATAAAGAGAACAGGGTGGTCAAAGAATTGATTTTTGATGACTCTTCACCCCCATTGAGCGTAAGGTTAAAACAGCTACGAAGTGCTTTGACAGAGATGCTTACCCCACAGAATTCCAATGTAGAAAGATATCTTCCAGCAAATGTTACCCCCTGTAGCAAGCTTTCTGGCATGGAACCATCCCAGATAAAGCAAATTCTTCCAATGACTACAACCCCCTCTTCAATACCTTGTGGAATACCCGCAGAGCCAAACACACCAAGGACTCCCCAAGTGGAACATAGGGAGGGAAAAGAAGAAACTTCCCAAGTTGGAACACCATTAGAGAGGTTCAGTGCACGTGGTTCAGGGTTAAAGAAATCTCTCACCAGAGATTACCTGTCTTTCCTCAATACTGCTAGCAGAGAGGAGCTGCTTGAGTTGAGGGGTATTGGAGAGAAGAGAGCCAATGATATTCTTGAACTACGACAAAGGTCTCCTGAGCCATTGAAGGAGCTTCAGGATCTAGAAAAAATTGGGCTTTCTTCCAAGCAGATAAAAACCATCTTCAATAGTACTGCTCGGCAAATACTATCTTGA___ATGAAAGGGATGCTGCAGTCTTCCATAAGTCACATCCTCAGTTCATTTATTTTGAATTGTACAATAGGCATTTATTGTTTTGTAATTTGCTATGCTGGATTTGCATTTTTTTCCCAACCTTTGGGAAAATGTTTTTATTTACCAGGTGATGGTAAATCAAGTGCATAGAACTGTGCTTTTTAAATTCCAGTAATTGTCATATTTTATTGGACCTTTTCTGTCAATGACTTGAGGTATGCTAACAGAGCTTTGCGTGGGGGCTAGTACTCTATCAGTCATTGGCAAGTATAGTGCACTGTAAATTTGGATCAGAAATTTCTTTTGAAGAATATTCCATGGTTGTTTGAATCTTTTGTTTGAACATGTGTACGATGATATTTTTGTCCACTGTATGACAATAATTTACTCTGGGACACTGGCTAGCTTATATTTGGAGCATGTATTCGCTTGACTTTGTATGGCTCTAGACTTATGCATTACAGAAGCAAATTCTGAGTCTCGCGGTTAAGTCGTTTTGACATTATTTTAAGTACTTAGCC

Fln Alignment:

Contig13827___RVEISYYEVYMDRCYDLLEPKNKEVPVLEDSEGRVQLRGLAQVRVNSLEEFQEVFNYGCLRRKVGHTGLNDVSSRSHGVLMVSVSSDDGNPDMP---LVGKLNLIDLAGNEDNR-RTGNEGLRLTESVRINQSLFALSNVIHALNANENRVPYRDSKLTRILQDSLGGTSRSLMIACLNPI--SYQEALHTVSLAAR
D5ACB2_______________RLWLSFFEIYGGKLYDLLGDRRK-LCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGRTVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADR

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
419	87			12	0.992554
421		12	87		0.992554
423		12		87	0.992554
578	20	80			0.995493
581	80			20	0.995493
647	14	85			0.993533
648		14	85		0.993533
650			85	14	0.993533
651	85			14	0.993533
2188	75		25		0.996473
2204	16			83	0.994512
2206		20	80		0.995493
2208		16	83		0.994512
2209	16		83		0.994512
2441			12	87	0.992554
2476	25	75			0.996473
2477		75		25	0.996473
2478	75		25		0.996473
2479	75		25		0.996473
2480		75	25		0.996473
2601	14	85			0.993533
2615		66		33	1.0
2653			83	16	0.994512
2696	20	80			0.995493
2700			75	25	0.996473
2708	33		66		0.997452
2709	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain