SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13783

Length: 1518 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13783

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: dnaJ homolog subfamily B member 12-like, partial n=1 Tax=Macaca mulatta RepID=UPI0000D9C587	-	-	2.0e-06	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	GOs	Term	Type	e value	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR015609	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX58

Fln msg: your sequence is shorter than subject: 419 - 563

Fln protein: SVCDHMQFRSKDNVNSLCAQFSNNVSISETALHSYWDFSAYGNKLLSCLQFLRSQDEETTRTVKLMIRFGKQLLYGPNLYEQLGSGDFISLPSLQDVYRRKKLNYMFSTACPETGVRDIRVQLERLEYVKVSSRKKISIHVADLEESQQPQRFNVSVRCDSNEGVLQNSEIKRISRAKDYFQVLDVDQGASDHELEKAYRQCLIRIQFEHHGLGSENAIRVAEEAYVNLKDPARRDRYLRKAVEASESAILNSSSKTPSSSEQKAVITRVRRLPKRHGFLAFCREGQATMDFRLGIVTHEADLNNIRPDMMAWVEQAWRDRTPDEILVFPPPGRFLVMNIRYKEAETYVTEDWKFRISHVAEGDRIGTIGNQRWECGLSSRWFKWNDGITGSRSMESIVKTDVVALVKEAVKFSQVTG*

Protein Length: 420

Fln nts: GTCTGTTTGCGATCACATGCAGTTTAGGTCTAAAGACAATGTGAATAGCCTGTGTGCCCAGTTTTCGAATAATGTCTCTATTTCAGAAACTGCCTTACATTCTTACTGGGACTTTTCGGCTTATGGAAATAAGCTGCTTTCATGTCTTCAATTCCTGCGCTCACAGGATGAGGAAACTACTCGGACAGTTAAATTGATGATTCGATTTGGGAAGCAGCTTTTATATGGGCCTAATTTATATGAGCAATTGGGTAGTGGAGATTTCATATCCCTGCCAAGCCTACAGGACGTTTACAGGCGGAAAAAACTGAATTATATGTTCTCCACTGCATGTCCAGAGACAGGTGTAAGAGATATTAGGGTTCAGTTAGAACGGCTGGAGTACGTTAAGGTCTCCAGTCGAAAAAAGATTAGCATTCATGTGGCAGATCTCGAAGAGTCGCAGCAGCCTCAGCGATTTAATGTATCTGTTCGTTGTGACAGTAACGAGGGAGTGTTGCAGAATAGTGAAATCAAACGTATTTCCCGTGCAAAAGATTATTTTCAAGTGTTAGATGTGGATCAGGGAGCATCGGATCATGAACTTGAGAAAGCCTACCGGCAGTGTTTGATCCGAATTCAGTTTGAACATCATGGGCTTGGGTCTGAAAATGCCATTAGGGTTGCTGAAGAAGCGTATGTTAATCTAAAAGATCCTGCAAGGCGAGATCGATACCTCCGGAAGGCTGTGGAAGCAAGCGAATCTGCCATCCTCAACTCTTCTTCCAAAACCCCAAGCAGTTCAGAGCAGAAGGCGGTAATTACAAGAGTTCGAAGGCTGCCAAAGAGACATGGGTTCCTGGCTTTCTGCAGAGAAGGGCAGGCAACAATGGATTTCAGGCTGGGAATTGTCACTCATGAAGCGGACCTTAATAATATTCGCCCAGATATGATGGCATGGGTAGAACAAGCATGGAGGGATCGAACCCCTGATGAAATACTTGTTTTTCCGCCGCCTGGCAGGTTTCTGGTGATGAACATTCGTTATAAAGAGGCTGAAACCTATGTTACAGAGGATTGGAAATTTCGTATTTCGCATGTGGCAGAAGGGGATAGGATTGGAACGATTGGTAACCAGAGATGGGAATGCGGATTGAGCAGCAGATGGTTTAAATGGAACGATGGAATAACGGGAAGCAGAAGCATGGAGTCCATTGTGAAGACCGATGTGGTTGCCCTCGTCAAAGAAGCGGTCAAGTTTAGTCAAGTCACTGGTTGA___GGAGGATATGTTGTCAATATAAGGTATTGGGTAGTTTTGAGGTTGGTTAGATAAAATTATATCAGTTCAGAGTTTTAGTGTTTGGAATCTAGTGTTTGGAATTTATTTGTAATTTAGTTTTGGTGTTTGGAATCTATTTGTAACTGTCGTATTTGTGTAGAATTTTTATATGAGAATTTTTGGATTTGAAGTGATTTAACCATAAATATGTTTTGTTGTAAATTTTTATTTGAATTATATAGTGAATAAAACTTAAATTT

Fln Alignment:

Contig13783___SVCDHMQFRSKDNVNSLCAQFSNNVSISETALHSYWDFSAYGNKLLSCLQFLRSQDEETTRTVKLMIRFGKQLLYGPNLYEQLGSGDFISLPSLQDVYRRKKLNYMFSTACPETGVRDIRVQLERLEYVKVSSRKKISIHVADLEESQQPQRFNVSVRCDSNEGVLQNSEIKRISRAKDYFQVLDVDQGASDHELEKAYRQCLIRIQFEHHGLGSENAIRVAEEAYVNLKDPARRDRYLRKAVEASESAILNXXXXXXXXXEQKAVITRVRRLPKRHGFLAFCREGQATMDFRLGIVTHEADLNNIRPDMMAWVEQAWRDRTPDEILVFPPPGRFLVMNIRYKEAETYVTEDWKFRISHVAEGDRIGTIGNQRWECGLSSRWFKWNDGITGSRSMESIVKTDVVALVKEAVKFSQVT
A9NX58_______________SVCDQMPFKSKYDVNSLCGQFSKNVSISETALHAYWDFSAYGNKLLSCLQFLRSRDEETTRTVKLMIRFGKQLLNGPNLYDQLGSGDLISLQRLQEVYRQKRMNYIFSTACSETALRAVRLQLEQLEYVKVSSRKKISIHVADLEDLGRAQRFNVSVRCDSNEGLLQNSEIKRISGAKDYFQVLDVDRAASDQELEKAYRRCLIRIQFDHHGVGSENAIRVAEEAYVNLLDPARRDRYLRKSMEASESVVLNTCSKTLISSEQKAVITRVRRLPKRHGFVVFCREGQTTVDFRLGVVTHAADLNDIRSEMVEWVEKAWRDRTPDQLFVFPHPGRFLMMNIRYKETETYVTEDWKFRISHVAEGDRTGLVRNRRWECGLSSRWFKWNDGITDSRSMESIMKTDVVALVKEAVKFSGVS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
129	66		33		0.997452
141	25	75			0.996473
300	33		66		1.0
341	75		25		1.0
384	87		12		0.992554
563		66		33	1.0
638		80		20	0.995493
889	14			85	0.993533
1175	90	10			0.90298
1181	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain