SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13757

Length: 951 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13757

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue [Hordeum vulgare]	-	-	2.0e-13	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	Gene names
Sma3	At1g69550; At5g11250; At5g44510; F10D13_24; F2I11_140; PHYPADRAFT_12156; PHYPADRAFT_127526; PHYPADRAFT_132267; PHYPADRAFT_132491; PHYPADRAFT_134549; PHYPADRAFT_139587; PHYPADRAFT_141262; PHYPADRAFT_141292; PHYPADRAFT_143437; PHYPADRAFT_145827; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G44510.1	TAO1 target of AVRB operation1 chr5:17929673-17934188 REVERSE LENGTH=1187	1.0e-14	48%
RefSeq	Arabidopsis thaliana	NP_199264.1	target of AVRB operation1 protein [Arabidopsis thaliana]	2.0e-14	48%
RefSeq	Populus trichocarpa	XP_002334784.1	predicted protein [Populus trichocarpa]	5.0e-15	51%

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
443			20	80	0.995493
444	80			20	0.995493
447		80	20		0.995493
450	20			80	0.995493
453		20	80		0.995493
455		80		20	0.995493
461	80		20		0.995493
462			80	20	0.995493
464	20			80	0.995493
466			28	71	1.0
467		14		85	0.993533
468	14	85			0.993533
470	66		33		1.0
472			33	66	1.0
473	33			66	1.0
475		33	66		1.0
478	66		33		1.0
480	66		33		1.0
482		33		66	1.0
485		66		33	1.0
486		33		66	1.0
487	33		66		1.0
681		14		85	0.993533
694			14	85	0.993533
716		85		14	0.993533
723			14	85	0.993533
752		85		14	0.993533
757			14	85	0.993533
804		20		80	0.995493
818		16	83		0.994512
828	66	33			1.0
839		33	66		1.0
865			60	40	1.0
881			33	66	0.997452
882			33	66	0.997452
886	66	33			0.997452
887		66	33		0.997452
888		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain