SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13756

Length: 979 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene13756 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-ubiquinone oxidoreductase n=1 Tax=Cycas taitungensis RepID=E1CBH2_CYCTA	-	-	96%
FL-Next	sp=NADH dehydrogenase [ubiquinone] iron-sulfur protein 3; Oryza sativa subsp. japonica (Rice). Mitochondrion.	-	-	69%
Sma3	NADH-ubiquinone oxidoreductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	4.43511e-42	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		4.43511e-42	%
Sma3	Metabolic pathways	01100		4.43511e-42	%
Sma3	NADH dehydrogenase.	EC:1.6.99.3	-	6.67e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		6.67e-07	%
Sma3	Metabolic pathways	01100		6.67e-07	%

Source	Gene names
Sma3	CHLREDRAFT_182980; HAM_032; MicpuC_mit23; MicpuN_mit80; NAD9; NUO9; OtMtg00180; P0557A01.28; POPTRDRAFT_679463; RCOM_2100430; VITISV_001361; VITISV_029599; cox1; nad9; nad9-1; nd9;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cytochrome-c oxidase activity	GO:0004129	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	aerobic respiration	GO:0009060	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome c oxidase, subunit I	IPR000883	-	-
Sma3	NADH:ubiquinone oxidoreductase, 30kDa subunit	IPR001268	-	-
Sma3	NADH dehydrogenase, subunit C	IPR010218	-	-
Sma3	Cytochrome c oxidase, subunit I bacterial type	IPR014241	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	ATMG00070.1	NAD9 NADH dehydrogenase subunit 9 chrM:23663-24235 REVERSE LENGTH=190	89%
RefSeq	Arabidopsis thaliana	NP_085479.1	NADH dehydrogenase subunit 9 (mitochondrion) [Arabidopsis thaliana]	89%
RefSeq	Populus trichocarpa	XP_002335983.1	predicted protein [Populus trichocarpa]	92%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
152	33	66			0.997452
170	66		33		0.997452
242			80	20	0.995493
362	16		83		0.994512
440	50		50		1.0
448		80		20	0.995493
449			20	80	0.995493
450	20			80	0.995493
453	60			20	0.99255
454	20		80		0.995493
455	60			40	1.0
456	20	20	40		0.994159
462	20	60	20		0.99255
472		60		40	1.0
473			60	40	1.0
475		60		40	1.0
476	40		60		1.0
761	50		50		1.0
839		10		90	0.90298
840		10		90	0.90298
842	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain