SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13748

Length: 807 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13748

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] gb\|AAK53040.1\|AF375456_1 AT5g65380/MNA5_11 [Arabidopsis thaliana] dbj\|BAB11560.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN28899.1\| At5g65380/MNA5_11 [Arabidopsis thaliana] gb\|AED980	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Multidrug resistance pump, putative	-	-	-

Source	Gene names
Sma3	117M18_21; 117M18_23; AT1G61890; AT4G21910; AT4g00350; AT4g21900; AT4g21910; AT4g25640; A_IG005I10.20; At1g11670; At1g12950; At1g33080; At1g33090; At1g33100; At1g33110; At1g47530; At1g61890; At3g21690; At3g26590; At3g59030; At4g00350; At4g21900; At4g21910

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	-
Sma3	maintenance of seed dormancy	GO:0010231	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65380.1	MATE efflux family protein chr5:26123241-26126352 REVERSE LENGTH=486	54%
RefSeq	Arabidopsis thaliana	NP_201341.1	mate efflux domain-containing protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002319744.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
133	33		66		0.997452
134	33			66	0.997452
136	66		33		0.997452
291	25			75	0.996473
294		75	25		0.996473
519	15			84	0.999986
579		22		77	0.999999
584		11		88	0.923564
585	11		88		0.923564
586			88	11	0.923564
587			88	11	0.923564
621		87		12	0.992554
622	12	87			0.992554
624		87		12	0.992554
625	28		71		1.0
629	16			83	0.994512
630		16		83	0.994512
633			16	83	0.994512
648		60		40	1.0
660	20		80		0.995493
699	40		60		1.0
736	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain