SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13645

Length: 1197 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13645

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SNS7_PHYPA	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	SNAP receptor activity	GO:0005484	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G11250.1	SYP125, ATSYP125 syntaxin of plants 125 chr1:3768724-3769706 FORWARD LENGTH=298	59%
RefSeq	Arabidopsis thaliana	NP_172591.1	syntaxin-125 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002323377.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P217

Fln msg: your sequence is shorter than subject: 261 - 300

Fln protein: EVSLIKAEMEQIRQLLLKLKEANEESKTITKAQAMKSLRERMDRDVVQILKKAKFIKAKLEELDRANLSSRGIPGCGQGSSTDRTRIATTNGLRNSLKKLMGEFQSLRQNIMGEYKETVERRYYTVTGERADEETIDHIIETGESENMLQRAIQEQGRGQIIEVIREIQERHDTVKEIEKNLLELQQIFLDMAVLVQTQGQELDNIEANVGRANSFVDGGTRKLRKARNLQKNTRKWTCIGIIILLIIILIIVLPLVLKK*

Protein Length: 262

Fln nts: CGGAAGTAAGCCTGATAAAAGCCGAGATGGAGCAGATCAGGCAGCTTCTTCTGAAATTAAAGGAGGCCAACGAAGAAAGCAAAACGATTACCAAAGCTCAGGCCATGAAATCTCTGAGAGAACGCATGGACAGAGATGTGGTGCAGATTCTGAAGAAGGCAAAGTTCATTAAAGCAAAATTGGAGGAGCTGGATAGGGCCAATCTGTCCAGCCGCGGGATTCCCGGGTGCGGGCAAGGGAGTTCCACCGACAGAACGCGCATCGCCACCACCAATGGGTTGAGAAATTCTCTGAAGAAATTGATGGGAGAATTCCAGAGTCTGAGACAGAATATCATGGGCGAGTACAAGGAGACGGTTGAGAGAAGGTACTACACTGTTACCGGTGAGAGAGCTGATGAAGAGACCATAGATCATATTATTGAAACAGGGGAAAGTGAAAACATGTTGCAGAGGGCGATTCAGGAACAGGGGAGAGGGCAGATTATTGAAGTGATCCGTGAGATTCAAGAGAGACATGACACTGTGAAAGAGATCGAGAAGAACTTGCTGGAATTGCAGCAGATTTTCCTTGACATGGCTGTTCTGGTGCAGACACAGGGTCAGGAGCTCGACAACATTGAAGCCAATGTGGGGCGTGCAAACTCTTTCGTTGATGGAGGCACGAGGAAGCTCAGAAAAGCAAGAAACCTTCAGAAGAATACCAGAAAGTGGACATGCATAGGAATAATCATTCTTCTCATCATAATTCTCATCATAGTTCTCCCTCTGGTGCTTAAAAAATAA___TTCAAGAGAACTTCTGTGCAGGATGGACTGTCTGTCGCCCATTTTACATATTGGTTAGAAGCAAATATTAGTCTCTACTTTATTTGTGATTTGAGTTTGTATTATATGATCTTATAGCGTTGTATATTCATTTTGGGTATTGCCTTTGTTGGGTTTATCAGTCTCTGTTTCAGGATTTCTAGAGCCATACAGGAGAGATCATCTATTGTTTCAGGGTTAGAAAATTGGAGGGTATTGGGTCGGTGATCAGGAGTTTGAGAGGCACATCTGGTGGCTATTTAAGAAAAGAGGCAAGGAGTAATTCATTGTAATGATTTTTTTACTTGGTATTTCAATTTTCATCAAAATCTTCACTGTCATGGTTGATTAATGAAATTCTTTGAGGAATAGTAACATTTTCCATTCAAATTCC

Fln Alignment:

Contig13645___EVSLIKAEMEQIRQLLLKLKEANEESKTITKAQAMKSLRERMDRDVVQXXXXXXXXXXXXXXLDRANLSSRGIPGCGQGSSTDRTRIATTNGLRNSLKKLMGEFQSLRQNIMGEYKETVERRYYTVTGERADEETIDHIIETGESENMLQRAIQEQXXXXXXXXXXXXXXXHDTVKEIEKNLLELQQIFLDMAVLVQTQGQELDNIEANVGRANSFVDGGTRKLRKARNLQKNTRKWTC
A9P217_______________EVSLMKTEMEQIRQLLLKLKEAHEESKTIHKAQAMKSLRERMDRDVLQILKKAKFIKGKLEELDKANLSSRKIPGCGQGSSTDRTRTATTNGLRNSLKKLMGEFQSLRQIIMAEYKETIERRYYTVTGEKADEETIDHIIETGESENMLQRAIQEQGKGQIIEVIREIQERHDTVKEIEKNLLELQQVFLDMAVLVQTQGQELDSIEANVERASSFVDGGTRKLRKARKLQKNTRKWTC

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
300	33			66	0.997452
301	33			66	0.997452
302		33	66		0.997452
305			66	33	0.997452
653		33		66	0.997452
752		33		66	0.997452
1105	28			71	1.0
1134	66		33		0.997452
1145	33	66			0.997452
1146	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain