SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13638

Length: 497 nt

UniGene Fasta

>sp_v3.0_unigene13638
ATGGGCAGTTTTGGTTGGGTGGATCCCCAGAGAACCTTGAAAACTTCTTTAAGATGATTGCTGGGATGTATGTGCCTGCTCTCAATAAAACGCAATTGGAGTTTGCTGATCCAGTCGTCTATTTGGACACAGGAATATGGCACCCTCTGGCTCCTTGCATGTACGATGATGTTAAAGAGTATTTGAATTGGTATGACACCAGAAAGGATGCAAATGAGAAACTCAAAAACCCTAATGCACCAGTCATTGGTATCGCCTTGCAAAGGAGCCACATTATTACTGGTGATGATGGTCATTATGTGGCTGTTGTGATGGAATTGGAAGCCAGAGGTGCAAAGGTTGTGCCAATCTTTTCAGGTGGATTAGATTTTTCAACCCCTGTGGAGCGCTTCTTGTATGATCCAATAACAAAGAAATCTCTTGTAGACGCTGTGGTTTCCTTGACTGGGTTTGCACTTGTGGGTGGACCTGCTAGACAGGATCATCCTCGTGCCATA

Ace file of the UniGene sp_v3.0_unigene13638

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Magnesium chelatase H subunit n=6 Tax=core eudicotyledons RepID=D5KXY0_VITVI	-	-	0.0	79%
FL-Next	sp=Magnesium-chelatase subunit ChlH, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	0.0	76%
Sma3	Magnesium-chelatase subunit chlH chloroplast	-	-	3.622e-09	-

Source	Gene names
Sma3	AT5G13630; At5g13630; CHLH; CHLH1; CHLH2; CHLREDRAFT_195524; Chl H; ChlH1; GSVIVT00025597001; LOC_Os03g20700; MICPUCDRAFT_26233; MICPUN_104801; OSTLU_45384; Os03g0323200; OsI_11362; OsJ_10668; Ot04g02230; PHATR_13265; PHYPADRAFT_226175; PHYPADRAFT_98257;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast inner membrane	GO:0009706	Cellular Component	-
Sma3	magnesium chelatase complex	GO:0010007	Cellular Component	-
Sma3	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	magnesium chelatase activity	GO:0016851	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	chlorophyll biosynthetic process	GO:0015995	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Exoribonuclease, phosphorolytic domain 1	IPR001247	-	-
Sma3	CobN/magnesium chelatase	IPR003672	-	-
Sma3	Magnesium-chelatase, subunit H	IPR011771	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13630.1	GUN5, CCH, CHLH, CCH1, ABAR magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) chr5:4387567-4392082 REVERSE LENGTH=1381	73%
RefSeq	Arabidopsis thaliana	NP_001078578.1	magnesium chelatase subunit H [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002308946.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q10M50

Fln msg: Distance to subject end: 974 aas, your sequence is shorter than subject: 165 - 1387

Fln protein: GQFWLGGSPENLENFFKMIAGMYVPALNKTQLEFADPVVYLDTGIWHPLAPCMYDDVKEYLNWYDTRKDANEKLKNPNAPVIGIALQRSHIITGDDGHYVAVVMELEARGAKVVPIFSGGLDFSTPVERFLYDPITKKSLVDAVVSLTGFALVGGPARQDHPRAI

Protein Length: 166

Fln nts: ATGGGCAGTTTTGGTTGGGTGGATCCCCAGAGAACCTTGAAAACTTCTTTAAGATGATTGCTGGGATGTATGTGCCTGCTCTCAATAAAACGCAATTGGAGTTTGCTGATCCAGTCGTCTATTTGGACACAGGAATATGGCACCCTCTGGCTCCTTGCATGTACGATGATGTTAAAGAGTATTTGAATTGGTATGACACCAGAAAGGATGCAAATGAGAAACTCAAAAACCCTAATGCACCAGTCATTGGTATCGCCTTGCAAAGGAGCCACATTATTACTGGTGATGATGGTCATTATGTGGCTGTTGTGATGGAATTGGAAGCCAGAGGTGCAAAGGTTGTGCCAATCTTTTCAGGTGGATTAGATTTTTCAACCCCTGTGGAGCGCTTCTTGTATGATCCAATAACAAAGAAATCTCTTGTAGACGCTGTGGTTTCCTTGACTGGGTTTGCACTTGTGGGTGGACCTGCTAGACAGGATCATCCTCGTGCCATA

Fln Alignment:

Contig13638___QFWLGGSPENLENFFKMIAGMYVPALNKTQLEFADPVVYLDTGIWHPLAPCMYDDVKEYLNWYDTRKDANEKLKNPNAPVIGIALQRSHIITGDDGHYVAVVMELEARGAKVVPIFSGGLDFSTPVERFLYDPITKKSLVDAVVSLTGFALVGGPARQDHPRAI
Q10M50_______________QFWLGGSPDNLQNFLKMIAVSYVPALKGADIKYDDPVLFLDAGIWHPLAPTMYDDVKEYLNWYGTRRDTNDKLKDPNAPVIGLVLQRSHIVTGDDGHYVAVIMELEAKGAKVIPIFAGGLDFSGPTQRYLVDPITGKPFVNAVVSLTGFALVGGPARQDHPKAI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
62	16		83		0.994512
63	16	83			0.994512
66			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain