SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13635

Length: 895 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene13635 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotide-binding protein-like n=4 Tax=Andropogoneae RepID=B6TU02_MAIZE	-	-	0.0	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Protein mrp, putative	-	-	3.741e-09	-

Source	Gene names
Sma3	AT4g19540; At3g24430; At4g19540; CHLREDRAFT_133548; F24J7.100; GSVIVT00023876001; LOC_Os03g42880; MICPUCDRAFT_57387; MICPUN_107712; MICPUN_58854; MNP1; OSJNBb0013K08.9; OSTLU_16185; OSTLU_37610; Os01g0719700; Os03g0627300; OsI_03540; OsI_12698; OsJ_03276;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Mrp, conserved site	IPR000808	-	-
Sma3	Domain of unknown function DUF59	IPR002744	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Domain of unknown function, DUF971	IPR010376	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G19540.1	INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like chr4:10657517-10659094 FORWARD LENGTH=313	67%
RefSeq	Arabidopsis thaliana	NP_193689.1	ATP-binding protein involved in chromosome partitioning [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002307635.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
351		83	16		0.994512
818		33		66	0.997452
819	33		66		0.997452
821			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain