SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13617

Length: 1321 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13617

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	amine oxidase [Nostoc punctiforme PCC 73102] gb\|ACC82043.1\| amine oxidase [Nostoc punctiforme PCC 73102]	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%

Source	Gene names
Sma3	CHLREDRAFT_113656; CHLREDRAFT_123582; PHYPADRAFT_132431; PHYPADRAFT_136811;

Source	GOs	Term	Type	e value	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000759	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS23

Fln msg: your sequence is shorter than subject: 263 - 574

Fln protein: DSNRVTSVSAVNEHGEAELYEADVVVFAVGVKALQKIVASSGALAARHEFSSTTNIGTVDVMAIRLWLDSLIQLKNPSNVLSGIGPGIGATLFDLNTLQEEFAKEMGSVLEVDLYHANPFMPLSDKVVIEKIMKYLSQCDKTLAVTQIVDSSVLRYKEAVTLFGPGSHQYMASTKTSFSNLFIAGDWLKQGPGSHGARGLSQEKSYVSGLIAANAATRSLGIDFCANIIGVEEDEPHVAVAKSTAREIRQTARNLGFDFPFL*

Protein Length: 264

Fln nts: GCGATTCTAACAGAGTCACATCTGTTTCAGCAGTGAATGAACATGGAGAGGCAGAGCTGTACGAAGCAGATGTGGTAGTTTTTGCTGTGGGAGTCAAAGCCCTTCAGAAAATTGTGGCCTCATCAGGTGCTTTAGCAGCTCGTCATGAGTTTTCTTCAACCACAAATATTGGGACAGTTGATGTAATGGCTATTCGATTGTGGTTGGATTCATTGATTCAACTTAAAAATCCTTCTAATGTTCTTTCTGGCATTGGACCTGGTATTGGTGCCACGTTATTTGACCTTAATACTTTGCAGGAAGAGTTTGCAAAGGAAATGGGAAGTGTCCTGGAGGTTGATCTGTATCATGCAAATCCATTTATGCCTTTGTCAGATAAGGTGGTTATTGAGAAGATCATGAAGTATTTGAGTCAATGCGACAAAACCTTGGCGGTCACTCAAATTGTGGACAGTAGTGTGCTTCGATACAAAGAAGCTGTTACTCTTTTTGGGCCTGGTTCGCACCAGTATATGGCATCTACTAAGACGAGTTTCTCAAATCTATTTATTGCGGGTGATTGGCTGAAACAAGGCCCGGGTTCACATGGAGCTCGAGGATTGTCTCAGGAGAAATCTTATGTCTCTGGGCTAATAGCTGCAAATGCAGCTACGAGAAGTCTTGGGATAGATTTCTGTGCAAACATAATTGGCGTGGAAGAAGATGAACCCCATGTAGCAGTGGCAAAATCGACAGCGAGAGAGATAAGGCAGACTGCACGGAACTTGGGTTTTGACTTTCCTTTCCTTTGA___AAACCACAACATGTGAGTTTAAATTCTAACATGCAACCATCTCATGATCTTTTAAGCATTCGATCAAAAATAAAATCACAAAATAGTGGTTAGGGACTGCTTAGAATCCATTAGCAGAACAGAGAGTGCATACGCTCTTATGAAACGAAAAGAACGGGATCAAACTAGCCCCGTATAATATCCAAAATCAATACCCTAGCCTACTGGCCACTACAACTCCTCTATCCTGTTTTCTCGGATCCATCTATAGGTATGTGTGTATTTTCAGAAGTGATATATTTCTTTGGAAAATGATATTTCTTCGGAAAATGAGCTGTAACTATGGCAACATTAAAGGGCTAGCAAACACCATCAGTTGGATCTCATACTTGGAAGCCGTAGTCGATTTCCAGGTTAGCAAATGTTTGGATTTCATGCTTAGACTACTCCGTTGTGTTTGGACCTGACAGGGCCTTTGAATAATATCTTGATATGTTGTATTTGCACCTAATATGCTTTAATCTTCCTTACGACAAGAAAACATTTATCAG

Fln Alignment:

Contig13617___ELYEADVVVFAVGVKALQKIVASSGALAARHEFSSTTNIGTVDVMAIRLWLDSLIQLKNPSNVLSGIGPGIGATLFDLNTLQEEFAKEMGSVLEVDLYHANPFMPLSDKVVIEKIMKYLSQCDKTLAVTQIVDSSVLRYKEAVTLFGPGSHQYMASTKTSFSNLFIAGDWLKQGPGSHGARGLSQEKSYVSGLIAANAATRSLGIDFCANIIGVEEDEPHVAVAKSTAREIRQTARNLGFDFPFL
B8LS23_______________EIFTADAVIFAVGITALQRIVYNSPVLQQREEFLNVLNLGAIDVLAVRIWLDRKVDIPKPSNACFGFDDSTGWTFFDLTALHDEYKDEPGTVVEADFYHANQFLPLKDDQIVEKVKAYLTTCIEEFGKANVVDQAVVRFPKSVTHFSPGSYRYMMRGNTSIPNLFMAGDWVITRHGS-----WSQEKAYVTGLEAANRVVDYFGEGQFAKIVPVEDDEPHVQELRRLNRVFNEIRTQLPLSDNFL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1244	14		85		0.993533
1255	85		14		0.993533
1296		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain