SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13586

Length: 557 nt

UniGene Fasta

>sp_v3.0_unigene13586
AAAACTGTTATTAGTTACGGGGAAAGTGACGAGGATAGCGATTGAAGAGGTTGAAGAAGATGAATATGAACATGAGGATCGCGGCCCTCCTCCTGCATCTGTGTCAGCGATAGAGAATTTGGGTACACAAGTAATCAGCCATGAACAAGTGGTCAGTGGAGATGCATTATGTTCGATCTGCAAGGACATGATACCTGCCGGTGAGGAAGCAAAAAAACTACCATGCGGACACCTCTATCATAGAGAATGCATCACTCGATGGCTTAATGTTAGAAACTTTTGTCCTCTCTGCAGATATGAGATGCCCACAGATGATCCATGATAATCATGTGATCCAGATATAAGTTTGTTGATTTCAGTGAAAACTGAATGCACCTTTACAGTTCGATTCAGAGTGGTCATTTTACACATTTATACGATTTTGGTGGTTGTGCACATTTATCCAATTCTTTATTCTGAGCATAGCTGTAATCCGATCGTTTGATTGTTATAATTTCTCTGCAATGTGATTGGAAAGGAAAACAAGCCCTATCCAATTTTTGTAGACATGTTAATAG

Ace file of the UniGene sp_v3.0_unigene13586

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAR20753.1\| At1g68180 [Arabidopsis thaliana] gb\|AAX22268.1\| At1g68180 [Arabidopsis thaliana] gb\|AAZ14055.1\| At1g68180 [Arabidopsis thaliana] gb\|AEE34760.1\| RING/U-box domain-containing protein	-	-	7.0e-17	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	Gene names
Sma3	At5g01980; GSVIVT00014397001; GSVIVT00017557001; GSVIVT00037060001; POPTRDRAFT_251246; POPTRDRAFT_282582; POPTRDRAFT_806221; RCOM_1466950; T7H20_30; VITISV_007725; VITISV_042386;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68180.1	RING/U-box superfamily protein chr1:25554816-25555562 FORWARD LENGTH=248	1.0e-21	52%
RefSeq	Arabidopsis thaliana	NP_176985.2	RING/U-box domain-containing protein [Arabidopsis thaliana]	2.0e-21	52%
RefSeq	Populus trichocarpa	XP_002322048.1	predicted protein, partial [Populus trichocarpa]	4.0e-24	54%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSK8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 85 aas, putative chimeric sequence, your sequence is shorter than subject: 107 - 282

Fln protein: KLLLVTGKVTRIAIEEVEEDEYEHEDRGPPPASVSAIENLGTQVISHEQVVSGDALCSICKDMIPAGEEAKKLPCGHLYHRECITRWLNVRNFCPLCRYEMPTDDP*

Protein Length: 108

Fln nts: AAAACTGTTATTAGTTACGGGGAAAGTGACGAGGATAGCGATTGAAGAGGTTGAAGAAGATGAATATGAACATGAGGATCGCGGCCCTCCTCCTGCATCTGTGTCAGCGATAGAGAATTTGGGTACACAAGTAATCAGCCATGAACAAGTGGTCAGTGGAGATGCATTATGTTCGATCTGCAAGGACATGATACCTGCCGGTGAGGAAGCAAAAAAACTACCATGCGGACACCTCTATCATAGAGAATGCATCACTCGATGGCTTAATGTTAGAAACTTTTGTCCTCTCTGCAGATATGAGATGCCCACAGATGATCCATGA___TAATCATGTGATCCAGATATAAGTTTGTTGATTTCAGTGAAAACTGAATGCACCTTTACAGTTCGATTCAGAGTGGTCATTTTACACATTTATACGATTTTGGTGGTTGTGCACATTTATCCAATTCTTTATTCTGAGCATAGCTGTAATCCGATCGTTTGATTGTTATAATTTCTCTGCAATGTGATTGGAAAGGAAAACAAGCCCTATCCAATTTTTGTAGACATGTTAATAG

Fln Alignment:

Contig13586___RGPPPASVSAIENLGTQVISHEQVVSGDALCSICKDMIPAGEEAKKLPCGHLYHRECITRWLNVRNFCPLCRYEM
C0PSK8_______________RGPPPASRASVDALENVKVSGKDAA---AQCAVCKDEFEPGKYAKRMPCNHMYHADCILPWLAQHNSCPVCRYEM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
247	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain