SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13583

Length: 553 nt

UniGene Fasta

>sp_v3.0_unigene13583
ATGGGGGGAATGCGGGTTGAGCAGCAGATGGTTTAAGTGGAACGATGGGATTACAGGCAGCACCAGTATGGATTCCATTGTTAAAACGGATGTAGTTGCTCTCGTCAAGGAAGCTGCTAAGTTTAGTCGAAGCCATGAGTCCATCACAGAGTACATGTAACTACCAGGAATAGCTTGACGGTAAAATGACTGTCTTGGTGCTTGCTAGGAGCAGGTCGCCAATCTTAGTGGAAATGATAACAGCACACAGTCATATTGGAAAAAAATACTGAGTTCAGGAAGTTACCTGAGAAGTTTGAAATTATGTATCGTGTTCAGCGGTATCTATAGGCCTGTAGTGTAGTGTATGAAGATACAATTTATATGAAGCAAAAATTGAGTTCAGGAGTGTAGTGTAGGAAGATACAATTTATATGAAAGCAAATATTTAGTTGAGGGAGTTATATGAGAAGTTTGAAATTATATATCATGTTCAAAGTTATTTATAAGTTAGTAGTGTAGGTCTATAGTGTAGGAAGATACAAGCAATATGAAAGCAAGTCTTATTATATTC

Ace file of the UniGene sp_v3.0_unigene13583

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	5.0e-14	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	GOs	Term	Type	e value	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR015609	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ46

Fln msg: your sequence is shorter than subject: 53 - 433

Fln protein: WGECGLSSRWFKWNDGITGSTSMDSIVKTDVVALVKEAAKFSRSHESITEYM*

Protein Length: 54

Fln nts: ATGGGGGGAATGCGGGTTGAGCAGCAGATGGTTTAAGTGGAACGATGGGATTACAGGCAGCACCAGTATGGATTCCATTGTTAAAACGGATGTAGTTGCTCTCGTCAAGGAAGCTGCTAAGTTTAGTCGAAGCCATGAGTCCATCACAGAGTACATGTAA___CTACCAGGAATAGCTTGACGGTAAAATGACTGTCTTGGTGCTTGCTAGGAGCAGGTCGCCAATCTTAGTGGAAATGATAACAGCACACAGTCATATTGGAAAAAAATACTGAGTTCAGGAAGTTACCTGAGAAGTTTGAAATTATGTATCGTGTTCAGCGGTATCTATAGGCCTGTAGTGTAGTGTATGAAGATACAATTTATATGAAGCAAAAATTGAGTTCAGGAGTGTAGTGTAGGAAGATACAATTTATATGAAAGCAAATATTTAGTTGAGGGAGTTATATGAGAAGTTTGAAATTATATATCATGTTCAAAGTTATTTATAAGTTAGTAGTGTAGGTCTATAGTGTAGGAAGATACAAGCAATATGAAAGCAAGTCTTATTATATTC

Fln Alignment:

Contig13583___ECGLSSRWFKWNDGITGSTSMDSIVKTDVVALVKEAAKFSRS
B8LQ46_______________ECGLSSRWFKWNDGITGSASMDSIVKTDVVALVKEAAKLSEA

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
60			66	33	0.997452
61		66	33		0.997452
62	66		33		0.997452
63		66	33		0.997452
103		66		33	0.997452
125	50	50			1.0
130	50			50	1.0
131	50		50		1.0
132	50		50		1.0
135	50			50	1.0
142		50		50	1.0
143	50		50		1.0
148	50			50	1.0
187		16		83	0.994512
220		83	16		0.994512
323		30		70	1.0
352	90		10		0.90298
369	90			10	0.90298
376	70			30	1.0
408		87		12	0.992554
409	85	14			0.993533
423		80		20	0.995493
433			75	25	0.996473
436		25	75		0.996473
451		25	75		0.996473
466	75		25		0.996473
470		75		25	0.996473
476		75	25		0.996473
482	25			75	0.996473
493		25		75	0.996473
494	75			25	0.996473
508	75		25		0.996473
528		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain