SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13541

Length: 3252 nt

UniGene Fasta

>sp_v3.0_unigene13541
ATGGGGATTTTTCACAATGGTGGGATCGGATGAAAAACTTGTCTAAGGGAAATTGCAGGGGAGTTGGGTTTGTCCTGACCTGCTCTGCCAAAGATTCTCTACAAAATGCAAATTATACCCACAAATAAACGACTCCAAATTAGTAATTCGGTAGTGGTATATACACCCTAGATCCTTCGTCTTGTCTTATCTGACTATACCCCATGCTAATTCTCAATAAATGACTGGATTTCATCCAGTCTCATCTCATTGCTTGCAGCCACGCCTGCAACATCCATTTCATTTCTTCTGCAGAATTTCTGCAGCAATTCAACTGTAAAGCTATCAATAGCAGCTAAAAGCAACAGGGATTCACTCTGCAAAGCTGTTTTCGTTTCATTTGGACCTCTGATTTGAAGTGGGTAGTTGACAAGATGGCTGCTGGAACAATTCCTGCTTCGTTCTCTGGTTTGAAGAAAACCGATTCCTTGCCAGGCTGCTTGCAGAGTACCCATGCTAGAAAAGGCTTTGCTATGCATAACTTTCAGAATCCGAGGTCATCGTCATTCCGGATAAGGTTTACTGGGGTCAGGAACTCATCCTCAGACATTGCAGAAATGAAGCCAGCTTCTGAGGGCAGTCCACTTTTGGTTCCCAGGCAGAAGTATTGTGAATCCATATACAAGACAATACGCAGAAAAACAAGAACAGTGATGGTTGGCAATGTCCCACTTGGGAGCGAACATCCTATCAGGGTTCAAACAATGACTACTACTGATACAAAGGATGTTCTTGGTACCGTAGAACAGGTCATGCGAATAGCCGATAAAGGAGCAGATCTTGTTCGAATCACTGTTCAGGGAAAAAAAGAAGCAGATGCTTGCCATGACATTAAAAATACCCTTGTACAGAAGGGCTATGATATTCCACTTGTGGCAGACATCCATTTTGCTCCTTCAGTTGCATTGCGTGTTGCAGAATATTTTGATAAGATCCGCGTTAATCCTGGAAATTTTGCTGACAGGCGTGCCCAATTTCAGAAACTAGAATACACAGAGGAAGACTATCAGAAGGAGCTTGAACACATTGAAGAGGTTTTCACACCATTGGTGGAGAAATGCAAGAAGTACGGAAGGGCAATGCGAATTGGCACAAACCATGGAAGTCTTTCCGATCGTACTATGAGTTACTATGGTGATTCTCCCAGGGGTATGGTGGAATCAGCATTTGAATTTGCACGCATTTGCCGGAAGTTGGATTTTCATAATTTTGTGTTTTCAATGAAAGCGAGCAATCCTGTAGTCATGGTTCAGGCATACCGTTTACTTGTTGCGGAGATGTATGTCCAAGGATGGGATTATCCATTGCATTTAGGAGTTACTGAAGCTGGTGAAGGTGAAGATGGACGCATGAAGTCTGCAATTGGCATTGGAACACTTTTGCAGGATGGTTTGGGTGATACTATTCGAGTTTCCCTTACAGAACCTCCAGAAGAGGAGATTAATCCCTGTAGAAGACTTGCAAATCTTGGGATGCAAGCTGCAAAGCTAGGGAAAGGAGTGGCTCCTTTTGAGGAGAAGCATCGTCATTACTTTACTTTCCAACGCAGGACTGGCCAGCTTCCAGTACAGAAGGAGGGTGATGAGGTGGATTATAGAGGAGTTCTGCATCGTGATGGTTCTGTTCTAATGTCAGTGTCTCTTGACCAGTTGAAGACACCAGAGATTTTGTACAAATCACTGGCAACAAAGCTTATTGTCGGCATGCCCTATAAGGATCTTGCAACAGTGGACACAATATTGTTGAGGGAACTTCCCCCGGCAGAGGACACCGAAGCGAGGCTGGCGATTAAAAGGCTTATAGACATAAGTATGGGCGTTTTGACACCTTTATCAGAGCAACTTACCAAACCTTTGCCAAACGCCATGGTCCTTGTAAATTTGAAGGAACTTTCAACGGGCGCTCACAAGCTTCTACCAGCAGGTACACGTTTGGCTGTAACTCTTCGAGGAGATGAAACATACGAGGAATTGGATGTCATCAAGAGTGTGGATGCCACAATGATTCTCTTAAATCTGCCTAGAGAAGAAGAGAAAGTTAACCGTGTCCATGCATCTCGAAGATTATTTGAGTACTTGCAAGAAAATGCACTCAACTTCCCCGTTATTCATCACATACAGTTTCCTGAAGGAACTCACAGGGATGATCTAGTCATCAGTGCAGGCAGTGAGGCAGGTGCTCTCCTTGTCGATGGTCTTGGTGATGGCTTAATGTTGGAGGCTTCAGACCAAGACTTCGATTTTCTTCGTAACACATCGTTTGGACTGCTCCAAGGATGCAGGATGCGCAATACAAAAACGGAGTATGTATCATGCCCATCATGTGGCCGCACTCTGTTTGACCTCCAAGAAATAAGTGCAGAGATTCGGGCGAAAACACAGCATCTTCCTGGTGTTTCGATTGCTATCATGGGCTGCATTGTGAATGGTCCTGGAGAGATGGCAGATGCAGACTTTGGATATGTTGGTGGGTCACCAGGAAAGATTGATCTCTATGTTGGAAAGGAAGTTGTCAAAAGAGGTATAGCAATGGAGCAAGCATGTGATGCTTTAATTCAGTTGATTAAGGACTATGGGCGATGGGTCGATCCTCCTGCTGAAGAATAATTTGGGACTGCTGCCCGTCTTAAATGTTTCAGTCAAGCTATTTAACATATCAGCATCGTAAGTACAACCTGTGTTAGAAGGCAACAAATTACAGAGGGGATCACTGGGCTCTAGATTAGTGTATGGTTCTCCTGGAGCTATGGGTTTGTTTAAAAGGCAATGGCCATCTCAGGGGAAGATATGGCGACTGAGGCAAAGACATTATATATCTTTTCTCTTCGAAAAGAGAGTACATAATGACAGTTTGTAAGGCCATTCTAGCAAAATAAGTGGAGTGACATGTTTCAAAAATAATTATCTTACAATCGAGCATTCAAAGCCATTCCTTTTTTTCGATTCAGAACTGTTTATGTATTCCATAAGGTACCGAGTTAGCTGTGGGTAAATGAAGGAGTCTAAAAATCCAGAGGACATGCTCCAAGCAATGACACAATGCAGGTACCTCATAAGCATGGGGAGTACATTTTAACGTTGTGTCTTAACAACCCCAAGTCAAAAATCATATATCTCTTCAAAAAACAGTGAAGAGAACATTTGCACCGTGAGAGGTGCACTCCACTGTGCAGGGGATTAAGATGTGTTATGTCCATCTGTGTGTTACACCTAC

Ace file of the UniGene sp_v3.0_unigene13541

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	(E)-4-hydroxy-3-methyl-but-2-enyl diphosphate synthase n=1 Tax=Ginkgo biloba RepID=A9CBE3_GINBI	-	-	87%
FL-Next	sp=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Sma3	(E)-4-hydroxy-3-methyl-but-2-enyl diphosphate synthase	-	-	-

Source	GOs	Term	Type	Identity
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	GO:0046429	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	terpenoid biosynthetic process	GO:0016114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical	IPR017178	-	0.0	-
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type	IPR004588	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60600.1	GCPE, ISPG, CSB3, CLB4, HDS 4-hydroxy-3-methylbut-2-enyl diphosphate synthase chr5:24359447-24363274 FORWARD LENGTH=741	80%
RefSeq	Arabidopsis thaliana	NP_851233.1	4-hydroxy-3-methylbut-2-enyl diphosphate synthase [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002314268.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: F4K0E8

Fln msg:

Fln protein: MAAGTIPASFSGLKKTDSLPGCLQSTHARKGFAMHNFQNPRSSSFRIRFTGVRNSSSDIAEMKPASEGSPLLVPRQKYCESIYKTIRRKTRTVMVGNVPLGSEHPIRVQTMTTTDTKDVLGTVEQVMRIADKGADLVRITVQGKKEADACHDIKNTLVQKGYDIPLVADIHFAPSVALRVAEYFDKIRVNPGNFADRRAQFQKLEYTEEDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRTMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEINPCRRLANLGMQAAKLGKGVAPFEEKHRHYFTFQRRTGQLPVQKEGDEVDYRGVLHRDGSVLMSVSLDQLKTPEILYKSLATKLIVGMPYKDLATVDTILLRELPPAEDTEARLAIKRLIDISMGVLTPLSEQLTKPLPNAMVLVNLKELSTGAHKLLPAGTRLAVTLRGDETYEELDVIKSVDATMILLNLPREEEKVNRVHASRRLFEYLQENALNFPVIHHIQFPEGTHRDDLVISAGSEAGALLVDGLGDGLMLEASDQDFDFLRNTSFGLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIRAKTQHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGKEVVKRGIAMEQACDALIQLIKDYGRWVDPPAEE*

Protein Length: 745

Fln nts: ATGGGGATTTTTCACAATGGTGGGATCGGATGAAAAACTTGTCTAAGGGAAATTGCAGGGGAGTTGGGTTTGTCCTGACCTGCTCTGCCAAAGATTCTCTACAAAATGCAAATTATACCCACAAATAAACGACTCCAAATTAGTAATTCGGTAGTGGTATATACACCCTAGATCCTTCGTCTTGTCTTATCTGACTATACCCCATGCTAATTCTCAATAAATGACTGGATTTCATCCAGTCTCATCTCATTGCTTGCAGCCACGCCTGCAACATCCATTTCATTTCTTCTGCAGAATTTCTGCAGCAATTCAACTGTAAAGCTATCAATAGCAGCTAAAAGCAACAGGGATTCACTCTGCAAAGCTGTTTTCGTTTCATTTGGACCTCTGATTTGAAGTGGGTAGTTGACAAG_-_ATGGCTGCTGGAACAATTCCTGCTTCGTTCTCTGGTTTGAAGAAAACCGATTCCTTGCCAGGCTGCTTGCAGAGTACCCATGCTAGAAAAGGCTTTGCTATGCATAACTTTCAGAATCCGAGGTCATCGTCATTCCGGATAAGGTTTACTGGGGTCAGGAACTCATCCTCAGACATTGCAGAAATGAAGCCAGCTTCTGAGGGCAGTCCACTTTTGGTTCCCAGGCAGAAGTATTGTGAATCCATATACAAGACAATACGCAGAAAAACAAGAACAGTGATGGTTGGCAATGTCCCACTTGGGAGCGAACATCCTATCAGGGTTCAAACAATGACTACTACTGATACAAAGGATGTTCTTGGTACCGTAGAACAGGTCATGCGAATAGCCGATAAAGGAGCAGATCTTGTTCGAATCACTGTTCAGGGAAAAAAAGAAGCAGATGCTTGCCATGACATTAAAAATACCCTTGTACAGAAGGGCTATGATATTCCACTTGTGGCAGACATCCATTTTGCTCCTTCAGTTGCATTGCGTGTTGCAGAATATTTTGATAAGATCCGCGTTAATCCTGGAAATTTTGCTGACAGGCGTGCCCAATTTCAGAAACTAGAATACACAGAGGAAGACTATCAGAAGGAGCTTGAACACATTGAAGAGGTTTTCACACCATTGGTGGAGAAATGCAAGAAGTACGGAAGGGCAATGCGAATTGGCACAAACCATGGAAGTCTTTCCGATCGTACTATGAGTTACTATGGTGATTCTCCCAGGGGTATGGTGGAATCAGCATTTGAATTTGCACGCATTTGCCGGAAGTTGGATTTTCATAATTTTGTGTTTTCAATGAAAGCGAGCAATCCTGTAGTCATGGTTCAGGCATACCGTTTACTTGTTGCGGAGATGTATGTCCAAGGATGGGATTATCCATTGCATTTAGGAGTTACTGAAGCTGGTGAAGGTGAAGATGGACGCATGAAGTCTGCAATTGGCATTGGAACACTTTTGCAGGATGGTTTGGGTGATACTATTCGAGTTTCCCTTACAGAACCTCCAGAAGAGGAGATTAATCCCTGTAGAAGACTTGCAAATCTTGGGATGCAAGCTGCAAAGCTAGGGAAAGGAGTGGCTCCTTTTGAGGAGAAGCATCGTCATTACTTTACTTTCCAACGCAGGACTGGCCAGCTTCCAGTACAGAAGGAGGGTGATGAGGTGGATTATAGAGGAGTTCTGCATCGTGATGGTTCTGTTCTAATGTCAGTGTCTCTTGACCAGTTGAAGACACCAGAGATTTTGTACAAATCACTGGCAACAAAGCTTATTGTCGGCATGCCCTATAAGGATCTTGCAACAGTGGACACAATATTGTTGAGGGAACTTCCCCCGGCAGAGGACACCGAAGCGAGGCTGGCGATTAAAAGGCTTATAGACATAAGTATGGGCGTTTTGACACCTTTATCAGAGCAACTTACCAAACCTTTGCCAAACGCCATGGTCCTTGTAAATTTGAAGGAACTTTCAACGGGCGCTCACAAGCTTCTACCAGCAGGTACACGTTTGGCTGTAACTCTTCGAGGAGATGAAACATACGAGGAATTGGATGTCATCAAGAGTGTGGATGCCACAATGATTCTCTTAAATCTGCCTAGAGAAGAAGAGAAAGTTAACCGTGTCCATGCATCTCGAAGATTATTTGAGTACTTGCAAGAAAATGCACTCAACTTCCCCGTTATTCATCACATACAGTTTCCTGAAGGAACTCACAGGGATGATCTAGTCATCAGTGCAGGCAGTGAGGCAGGTGCTCTCCTTGTCGATGGTCTTGGTGATGGCTTAATGTTGGAGGCTTCAGACCAAGACTTCGATTTTCTTCGTAACACATCGTTTGGACTGCTCCAAGGATGCAGGATGCGCAATACAAAAACGGAGTATGTATCATGCCCATCATGTGGCCGCACTCTGTTTGACCTCCAAGAAATAAGTGCAGAGATTCGGGCGAAAACACAGCATCTTCCTGGTGTTTCGATTGCTATCATGGGCTGCATTGTGAATGGTCCTGGAGAGATGGCAGATGCAGACTTTGGATATGTTGGTGGGTCACCAGGAAAGATTGATCTCTATGTTGGAAAGGAAGTTGTCAAAAGAGGTATAGCAATGGAGCAAGCATGTGATGCTTTAATTCAGTTGATTAAGGACTATGGGCGATGGGTCGATCCTCCTGCTGAAGAATAA___TTTGGGACTGCTGCCCGTCTTAAATGTTTCAGTCAAGCTATTTAACATATCAGCATCGTAAGTACAACCTGTGTTAGAAGGCAACAAATTACAGAGGGGATCACTGGGCTCTAGATTAGTGTATGGTTCTCCTGGAGCTATGGGTTTGTTTAAAAGGCAATGGCCATCTCAGGGGAAGATATGGCGACTGAGGCAAAGACATTATATATCTTTTCTCTTCGAAAAGAGAGTACATAATGACAGTTTGTAAGGCCATTCTAGCAAAATAAGTGGAGTGACATGTTTCAAAAATAATTATCTTACAATCGAGCATTCAAAGCCATTCCTTTTTTTCGATTCAGAACTGTTTATGTATTCCATAAGGTACCGAGTTAGCTGTGGGTAAATGAAGGAGTCTAAAAATCCAGAGGACATGCTCCAAGCAATGACACAATGCAGGTACCTCATAAGCATGGGGAGTACATTTTAACGTTGTGTCTTAACAACCCCAAGTCAAAAATCATATATCTCTTCAAAAAACAGTGAAGAGAACATTTGCACCGTGAGAGGTGCACTCCACTGTGCAGGGGATTAAGATGTGTTATGTCCATCTGTGTGTTACACCTAC

Fln Alignment:

Contig13541___MAAGTIPASFSGLKKTDSLPGCLQSTHARKGFAMHNFQNPRSSSFRIRFTGVRNSSSDIAEMKPASEGSPLLVPRQKYCESIYKTIRRKTRTVMVGNVPLGSEHPIRVQTMTTTDTKDVLGTVEQVMRIADKGADLVRITVQGKKEADACHDIKNTLVQKGYDIPLVADIHFAPSVALRVAEYFDKIRVNPGNFADRRAQFQKLEYTEEDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRTMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEINPCRRLANLGMQAAKLGKGVAPFEEKHRHYFTFQRRTGQLPVQKEGDEVDYRGVLHRDGSVLMSVSLDQLKTPEILYKSLATKLIVGMPYKDLATVDTILLRELPPAEDTEARLAIKRLIDISMGVLTPLSEQLTKPLPNAMVLVNLKELSTGAHKLLPAGTRLAVTLRGDETYEELDVIKSVDATMILLNLPREEEKVNRVHASRRLFEYLQENALNFPVIHHIQFPEGTHRDDLVISAGSEXXXXXXXXXXXXXMLEASDQDFDFLRNTSFGLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIRAKTQHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGKEVVKRGIAMEQACDALIQLIKDYGRWVDPPAEE
F4K0E8_______________MATGVLPAPVSGIKIPDSKVGFGKSMNLVR---ICDVRSLRSARRRVSVIRNSNQGSDLAELQPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGTVDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSISLDQLKAPELLYRSLATKLVVGMPFKDLATVDSILLRELPPVDDQVARLALKRLIDVSMGVIAPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDATMILHDVPFTEDKVSRVHAARRLFEFLSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGGLLVDGLGDGVMLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGKTVVKRGIAMTEATDALIGLIKEHGRWVDPPVAD

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
124	66			33	0.997452
127	66		33		0.997452
128	66		33		0.997452
129	66		33		0.997452
130		66	33		0.997452
208		33		66	1.0
243	33	33	33		0.997753
263		66		33	0.997452
271	33			66	1.0
357		14	85		0.993533
402	40		60		1.0
424		40	20	40	1.0
884	10			90	0.90298
940		11		88	0.923564
945	11			88	0.923564
947			88	11	0.923564
948	11	88			0.923564
950	11			88	0.923564
1104	87		12		0.992554
1105	87	12			0.992554
1108	87			12	0.992554
1111		12	87		0.992554
1112	87			12	0.992554
1688	15		84		0.999986
1719	15	84			0.999986
1722			83	16	0.999991
1775	14		85		0.993533
1825		88		11	0.923564
1925		11	88		0.923564
1926	11		88		0.923564
1927	88			11	0.923564
1928	88			11	0.923564
1940		12		87	0.992554
1994		12		87	0.992554
2003		10		90	0.90298
2017		11		88	0.923564
2091	17		82		1.0
2411	47		52		1.0
2546	90	2			0.999998
2586	5		95		0.997749
2588	5			95	0.997749
2662		87	12		0.992554
2674		85		14	0.993533
2745	87		12		0.992554
2848	10			90	0.90298
2875	63		36		1.0
2899		84		15	1.0
2930		6		92	1.0
2965	16	61			1.0
2967	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain